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Experiment Mouse_E11_5_slice_2, section s39.

Sample reads: 96,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3177.96 33022.51 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2418.06 25126.31 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Co2 ENSMUSG00000064354 2312.13 24025.58 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
4. mt-Nd4 ENSMUSG00000064363 2219.17 23059.63 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Atp6 ENSMUSG00000064357 2217.01 23037.18 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. mt-Nd1 ENSMUSG00000064341 2098.11 21801.68 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1104.72 11479.26 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 970.68 10086.44 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. mt-Rnr2 ENSMUSG00000064339 893.94 9289.02 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
10. Actb ENSMUSG00000029580 835.57 8682.50 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Nd3 ENSMUSG00000064360 824.76 8570.17 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. mt-Co3 ENSMUSG00000064358 771.79 8019.75 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. Igf2 ENSMUSG00000048583 731.80 7604.21 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
14. Mdk ENSMUSG00000027239 685.32 7121.23 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. Eef1a1 ENSMUSG00000037742 594.52 6177.72 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. mt-Nd2 ENSMUSG00000064345 533.98 5548.64 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
17. Hbb-y ENSMUSG00000052187 531.82 5526.20 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
18. Cdkn1c ENSMUSG00000037664 362.12 3762.83 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
19. Gm13340 ENSMUSG00000083563 344.82 3583.06 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Tuba1b ENSMUSG00000023004 287.53 2987.75 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
21. mt-Nd5 ENSMUSG00000064367 285.37 2965.31 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
22. Npm1 ENSMUSG00000057113 277.80 2886.65 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Hmga2 ENSMUSG00000056758 275.64 2864.20 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
24. Hba-a1 ENSMUSG00000069919 269.15 2796.77 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
25. Tubb5 ENSMUSG00000001525 262.67 2729.43 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Pkm ENSMUSG00000032294 237.81 2471.11 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
27. Cfl1 ENSMUSG00000056201 234.56 2437.34 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
28. Hba-x ENSMUSG00000055609 230.24 2392.45 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
29. Nedd4 ENSMUSG00000032216 225.92 2347.56 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
30. Ubb ENSMUSG00000019505 224.84 2336.34 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Pbx1 ENSMUSG00000052534 220.51 2291.34 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
32. Tpt1 ENSMUSG00000060126 211.86 2201.46 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
33. Chchd2 ENSMUSG00000070493 209.70 2179.01 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
34. Hsp90ab1 ENSMUSG00000023944 182.68 1898.25 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
35. Eif4g2 ENSMUSG00000005610 180.52 1875.80 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
36. Rpsa ENSMUSG00000032518 180.52 1875.80 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
37. Gm15459 ENSMUSG00000100801 176.19 1830.81 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
38. Set ENSMUSG00000054766 172.95 1797.14 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
39. Ybx1 ENSMUSG00000028639 171.87 1785.92 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
40. Acta2 ENSMUSG00000035783 167.55 1741.03 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
41. Rpl4 ENSMUSG00000032399 163.22 1696.04 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
42. Grb10 ENSMUSG00000020176 151.33 1572.49 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
43. Atp5g3 ENSMUSG00000018770 148.09 1538.82 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
44. Ywhab ENSMUSG00000018326 148.09 1538.82 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
45. Rps4x ENSMUSG00000031320 145.93 1516.37 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
46. Crabp1 ENSMUSG00000032291 140.52 1460.16 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
47. Rpl23 ENSMUSG00000071415 140.52 1460.16 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
48. Eef1b2 ENSMUSG00000025967 139.44 1448.94 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
49. Rps26 ENSMUSG00000025362 139.44 1448.94 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
50. Hsp90aa1 ENSMUSG00000021270 135.12 1404.05 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
51. Eif5a ENSMUSG00000078812 134.04 1392.82 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
52. Rps20 ENSMUSG00000028234 125.39 1302.94 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
53. Pcbp1 ENSMUSG00000051695 124.31 1291.72 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
54. Col3a1 ENSMUSG00000026043 123.23 1280.50 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
55. Rps3a1 ENSMUSG00000028081 122.15 1269.27 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
56. Peg3 ENSMUSG00000002265 121.07 1258.05 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
57. Hba-a2 ENSMUSG00000069917 118.90 1235.50 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
58. Ran ENSMUSG00000029430 118.90 1235.50 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
59. Hbb-bh1 ENSMUSG00000052217 117.82 1224.28 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
60. Hnrnpc ENSMUSG00000060373 117.82 1224.28 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
61. Pabpc1 ENSMUSG00000022283 117.82 1224.28 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
62. Rps5 ENSMUSG00000012848 117.82 1224.28 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
63. Meg3 ENSMUSG00000021268 112.42 1168.17 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
64. Myl6 ENSMUSG00000090841 112.42 1168.17 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
65. Gm10800 ENSMUSG00000075014 108.09 1123.17 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
66. Paics ENSMUSG00000029247 108.09 1123.17 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
67. Rpl32 ENSMUSG00000057841 108.09 1123.17 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
68. Fkbp1a ENSMUSG00000032966 107.01 1111.95 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
69. Marcks ENSMUSG00000069662 105.93 1100.73 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
70. Tmsb4x ENSMUSG00000049775 105.93 1100.73 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
71. Rps9 ENSMUSG00000006333 103.77 1078.28 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
72. U2af2 ENSMUSG00000030435 102.69 1067.06 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
73. Actc1 ENSMUSG00000068614 101.61 1055.84 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
74. Cox8a ENSMUSG00000035885 101.61 1055.84 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
75. Rpl18a ENSMUSG00000045128 100.53 1044.62 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
76. Banf1 ENSMUSG00000024844 99.45 1033.40 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
77. Cdk4 ENSMUSG00000006728 99.45 1033.40 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
78. Gm14303 ENSMUSG00000081344 99.45 1033.40 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
79. Trim28 ENSMUSG00000005566 98.37 1022.17 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
80. Ywhae ENSMUSG00000020849 97.28 1010.85 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
81. Eef2 ENSMUSG00000034994 96.20 999.62 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
82. Fscn1 ENSMUSG00000029581 96.20 999.62 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
83. Wbp5 96.20 999.62 WW domain binding protein 5
84. Rplp1 ENSMUSG00000007892 95.12 988.40 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
85. Hmgn1 ENSMUSG00000040681 94.04 977.18 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
86. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 94.04 977.18 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
87. Tpm4 ENSMUSG00000031799 92.96 965.96 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
88. Gm5805 ENSMUSG00000061848 89.72 932.29 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
89. Ago2 ENSMUSG00000036698 88.64 921.07 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
90. Igfbp5 ENSMUSG00000026185 88.64 921.07 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
91. Sparc ENSMUSG00000018593 87.56 909.85 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
92. Basp1 ENSMUSG00000045763 84.31 876.07 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
93. Plagl1 ENSMUSG00000019817 84.31 876.07 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
94. H3f3b ENSMUSG00000016559 83.23 864.85 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
95. Calr ENSMUSG00000003814 82.15 853.63 calreticulin [Source:MGI Symbol;Acc:MGI:88252]
96. Tpm1 ENSMUSG00000032366 82.15 853.63 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
97. Rpl8 ENSMUSG00000003970 78.91 819.96 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
98. Srsf3 ENSMUSG00000071172 77.83 808.74 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
99. Gm14586 ENSMUSG00000083621 76.75 797.52 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
100. Col1a2 ENSMUSG00000029661 75.67 786.29 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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