Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s38.

Sample reads: 96,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3687.66 38314.76 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2704.20 28096.62 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2464.82 25609.46 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co2 ENSMUSG00000064354 2195.82 22814.56 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd1 ENSMUSG00000064341 2136.59 22199.16 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Nd4 ENSMUSG00000064363 2131.65 22147.83 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1231.48 12795.07 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 1182.12 12282.22 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. Actb ENSMUSG00000029580 997.03 10359.14 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
10. mt-Nd3 ENSMUSG00000064360 856.98 8904.02 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. mt-Co3 ENSMUSG00000064358 797.75 8288.62 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. Igf2 ENSMUSG00000048583 671.27 6974.49 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
13. Eef1a1 ENSMUSG00000037742 666.33 6923.16 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. mt-Rnr2 ENSMUSG00000064339 600.93 6243.66 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
15. Mdk ENSMUSG00000027239 555.89 5775.69 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. mt-Nd2 ENSMUSG00000064345 535.53 5564.15 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
17. Hbb-y ENSMUSG00000052187 510.86 5307.83 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
18. Cdkn1c ENSMUSG00000037664 376.97 3916.72 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
19. Gm13340 ENSMUSG00000083563 372.65 3871.83 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Hba-a1 ENSMUSG00000069919 343.04 3564.18 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
21. Cfl1 ENSMUSG00000056201 260.36 2705.14 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
22. Npm1 ENSMUSG00000057113 250.49 2602.59 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Tpt1 ENSMUSG00000060126 250.49 2602.59 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
24. Tuba1b ENSMUSG00000023004 237.54 2468.04 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
25. Ubb ENSMUSG00000019505 230.75 2397.49 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
26. Nedd4 ENSMUSG00000032216 227.66 2365.39 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. mt-Nd5 ENSMUSG00000064367 223.35 2320.61 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
28. Tubb5 ENSMUSG00000001525 222.11 2307.72 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
29. Hba-x ENSMUSG00000055609 219.03 2275.72 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
30. Acta2 ENSMUSG00000035783 213.47 2217.95 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
31. Hmga2 ENSMUSG00000056758 211.01 2192.39 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
32. Pkm ENSMUSG00000032294 202.37 2102.62 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
33. Hsp90ab1 ENSMUSG00000023944 186.94 1942.31 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
34. Chchd2 ENSMUSG00000070493 178.31 1852.64 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
35. Rpsa ENSMUSG00000032518 177.69 1846.20 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
36. Atp5g3 ENSMUSG00000018770 169.05 1756.43 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
37. Rpl23 ENSMUSG00000071415 169.05 1756.43 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
38. Rps20 ENSMUSG00000028234 166.58 1730.77 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
39. Hba-a2 ENSMUSG00000069917 152.39 1583.33 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
40. Eif4g2 ENSMUSG00000005610 149.31 1551.33 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
41. Grb10 ENSMUSG00000020176 148.69 1544.89 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
42. Crabp1 ENSMUSG00000032291 146.22 1519.22 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
43. Fkbp1a ENSMUSG00000032966 145.61 1512.89 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
44. Actc1 ENSMUSG00000068614 143.76 1493.67 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
45. Hbb-bh1 ENSMUSG00000052217 143.76 1493.67 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
46. Pbx1 ENSMUSG00000052534 143.76 1493.67 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
47. Rpl4 ENSMUSG00000032399 141.90 1474.34 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
48. Ywhab ENSMUSG00000018326 141.90 1474.34 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
49. Rpl18a ENSMUSG00000045128 140.05 1455.12 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
50. Myl6 ENSMUSG00000090841 137.59 1429.56 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
51. Eef1b2 ENSMUSG00000025967 136.35 1416.68 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
52. Eif5a ENSMUSG00000078812 136.35 1416.68 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
53. Tmsb4x ENSMUSG00000049775 135.73 1410.23 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
54. Hnrnpc ENSMUSG00000060373 131.42 1365.45 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
55. Col3a1 ENSMUSG00000026043 130.80 1359.01 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
56. Rps4x ENSMUSG00000031320 130.80 1359.01 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
57. Tmsb10 ENSMUSG00000079523 130.80 1359.01 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
58. Eef2 ENSMUSG00000034994 130.18 1352.57 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
59. Rpl37 ENSMUSG00000041841 128.95 1339.79 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
60. Ran ENSMUSG00000029430 125.25 1301.35 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
61. Rps26 ENSMUSG00000025362 121.54 1262.80 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
62. Meg3 ENSMUSG00000021268 120.31 1250.02 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
63. Pcbp1 ENSMUSG00000051695 118.46 1230.80 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
64. Ybx1 ENSMUSG00000028639 116.61 1211.58 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
65. Hsp90aa1 ENSMUSG00000021270 114.14 1185.91 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
66. Banf1 ENSMUSG00000024844 112.91 1173.13 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
67. U2af2 ENSMUSG00000030435 112.29 1166.69 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
68. Rps5 ENSMUSG00000012848 108.59 1128.25 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
69. Ywhae ENSMUSG00000020849 107.35 1115.37 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
70. Hmgn1 ENSMUSG00000040681 106.74 1109.03 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
71. Rplp1 ENSMUSG00000007892 106.12 1102.59 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
72. Marcks ENSMUSG00000069662 104.27 1083.36 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
73. Trim28 ENSMUSG00000005566 103.03 1070.48 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
74. Pabpc1 ENSMUSG00000022283 102.42 1064.14 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
75. Rps3a1 ENSMUSG00000028081 100.57 1044.92 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
76. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 99.95 1038.48 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
77. Ndufa12 ENSMUSG00000020022 98.72 1025.70 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
78. Paics ENSMUSG00000029247 98.72 1025.70 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
79. Rps9 ENSMUSG00000006333 98.72 1025.70 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
80. Set ENSMUSG00000054766 98.10 1019.26 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
81. Ago2 ENSMUSG00000036698 96.25 1000.04 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
82. Cdk4 ENSMUSG00000006728 96.25 1000.04 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
83. H3f3b ENSMUSG00000016559 96.25 1000.04 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
84. Lamp1 ENSMUSG00000031447 95.63 993.60 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
85. Fscn1 ENSMUSG00000029581 95.01 987.15 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
86. Rpl32 ENSMUSG00000057841 93.16 967.93 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
87. Rpl41 ENSMUSG00000093674 92.55 961.59 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
88. Gm5805 ENSMUSG00000061848 90.08 935.93 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
89. Plagl1 ENSMUSG00000019817 88.84 923.05 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
90. Gm14303 ENSMUSG00000081344 87.61 910.27 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
91. Peg3 ENSMUSG00000002265 87.61 910.27 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
92. Tpm4 ENSMUSG00000031799 85.76 891.05 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
93. Ddx5 ENSMUSG00000020719 85.14 884.60 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
94. Tuba1a ENSMUSG00000072235 84.53 878.27 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
95. Morf4l1 ENSMUSG00000062270 83.91 871.82 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
96. Col1a1 ENSMUSG00000001506 83.29 865.38 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
97. Anp32b ENSMUSG00000028333 82.06 852.60 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
98. Cox8a ENSMUSG00000035885 81.44 846.16 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
99. Ngfrap1 80.82 839.72 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
100. Stmn1 ENSMUSG00000028832 80.82 839.72 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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