Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s37.

Sample reads: 96,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3941.14 40952.69 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 2908.55 30222.97 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Nd4 ENSMUSG00000064363 2687.33 27924.25 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Nd1 ENSMUSG00000064341 2504.91 26028.71 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. Ptma ENSMUSG00000026238 2479.72 25766.96 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
6. mt-Co2 ENSMUSG00000064354 2477.68 25745.76 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1472.31 15298.89 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Co3 ENSMUSG00000064358 965.89 10036.64 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
9. mt-Nd3 ENSMUSG00000064360 942.74 9796.08 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. H19 ENSMUSG00000000031 798.44 8296.65 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. Actb ENSMUSG00000029580 761.00 7907.61 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. mt-Rnr2 ENSMUSG00000064339 654.13 6797.11 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
13. Eef1a1 ENSMUSG00000037742 639.16 6641.56 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. Igf2 ENSMUSG00000048583 605.13 6287.95 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. mt-Nd2 ENSMUSG00000064345 508.47 5283.55 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
16. Mdk ENSMUSG00000027239 466.27 4845.05 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. Hbb-y ENSMUSG00000052187 433.59 4505.47 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
18. Gm13340 ENSMUSG00000083563 396.84 4123.59 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Cdkn1c ENSMUSG00000037664 288.61 2998.97 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
20. Tubb5 ENSMUSG00000001525 285.21 2963.64 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
21. Tuba1b ENSMUSG00000023004 278.40 2892.88 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
22. mt-Nd5 ENSMUSG00000064367 269.55 2800.91 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
23. Npm1 ENSMUSG00000057113 267.51 2779.72 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Hba-a1 ENSMUSG00000069919 239.60 2489.70 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
25. Hmga2 ENSMUSG00000056758 232.11 2411.87 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
26. Cfl1 ENSMUSG00000056201 230.75 2397.74 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
27. Ubb ENSMUSG00000019505 230.07 2390.67 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
28. Nedd4 ENSMUSG00000032216 223.94 2326.98 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
29. Rpsa ENSMUSG00000032518 214.41 2227.95 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
30. Hba-x ENSMUSG00000055609 198.76 2065.33 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
31. Rpl4 ENSMUSG00000032399 191.27 1987.50 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
32. Tpt1 ENSMUSG00000060126 186.51 1938.04 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
33. Pkm ENSMUSG00000032294 165.41 1718.79 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
34. Rpl23 ENSMUSG00000071415 164.04 1704.55 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
35. Eif4g2 ENSMUSG00000005610 157.24 1633.89 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
36. Myl6 ENSMUSG00000090841 156.56 1626.83 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
37. Hsp90ab1 ENSMUSG00000023944 154.51 1605.53 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
38. Eef1b2 ENSMUSG00000025967 153.83 1598.46 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
39. Rps26 ENSMUSG00000025362 151.11 1570.20 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
40. Tmsb4x ENSMUSG00000049775 151.11 1570.20 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
41. Pbx1 ENSMUSG00000052534 149.07 1549.00 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
42. Chchd2 ENSMUSG00000070493 148.39 1541.93 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
43. Rps20 ENSMUSG00000028234 145.67 1513.67 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
44. Acta2 ENSMUSG00000035783 143.62 1492.37 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
45. Hnrnpc ENSMUSG00000060373 142.26 1478.23 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
46. Ybx1 ENSMUSG00000028639 135.46 1407.58 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
47. Atp5g3 ENSMUSG00000018770 134.77 1400.41 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
48. Col3a1 ENSMUSG00000026043 134.77 1400.41 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
49. Grb10 ENSMUSG00000020176 132.05 1372.14 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
50. Ran ENSMUSG00000029430 129.33 1343.88 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
51. Eif5a ENSMUSG00000078812 127.97 1329.75 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
52. Hsp90aa1 ENSMUSG00000021270 126.61 1315.61 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
53. Actc1 ENSMUSG00000068614 124.56 1294.31 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
54. Meg3 ENSMUSG00000021268 124.56 1294.31 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
55. Rps4x ENSMUSG00000031320 123.88 1287.25 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
56. Ywhab ENSMUSG00000018326 123.20 1280.18 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
57. U2af2 ENSMUSG00000030435 115.72 1202.46 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
58. Pcbp1 ENSMUSG00000051695 114.35 1188.22 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
59. Hba-a2 ENSMUSG00000069917 112.99 1174.09 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
60. Hbb-bh1 ENSMUSG00000052217 110.95 1152.89 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
61. Hmgn1 ENSMUSG00000040681 110.27 1145.82 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
62. Fkbp1a ENSMUSG00000032966 108.91 1131.69 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
63. Set ENSMUSG00000054766 108.23 1124.63 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
64. Crabp1 ENSMUSG00000032291 107.55 1117.56 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
65. Marcks ENSMUSG00000069662 107.55 1117.56 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
66. Paics ENSMUSG00000029247 106.87 1110.49 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
67. Rpl18a ENSMUSG00000045128 104.82 1089.19 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
68. Rpl41 ENSMUSG00000093674 104.82 1089.19 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
69. Tuba1a ENSMUSG00000072235 104.82 1089.19 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
70. Rps9 ENSMUSG00000006333 102.78 1067.99 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
71. Rps5 ENSMUSG00000012848 102.10 1060.93 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
72. Pabpc1 ENSMUSG00000022283 100.74 1046.80 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
73. Gm14303 ENSMUSG00000081344 99.38 1032.67 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
74. Peg3 ENSMUSG00000002265 98.02 1018.53 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
75. Rps3a1 ENSMUSG00000028081 98.02 1018.53 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
76. Rpl32 ENSMUSG00000057841 91.21 947.77 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
77. Tpm4 ENSMUSG00000031799 91.21 947.77 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
78. Banf1 ENSMUSG00000024844 89.17 926.57 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
79. Gm5805 ENSMUSG00000061848 88.49 919.51 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
80. Tpm1 ENSMUSG00000032366 88.49 919.51 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
81. Wbp5 87.81 912.44 WW domain binding protein 5
82. Gm10800 ENSMUSG00000075014 85.77 891.24 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
83. Cdk4 ENSMUSG00000006728 85.09 884.18 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
84. Hnrnpa2b1 ENSMUSG00000004980 83.72 869.94 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
85. Trim28 ENSMUSG00000005566 83.72 869.94 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
86. Igfbp5 ENSMUSG00000026185 82.36 855.81 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
87. Anp32b ENSMUSG00000028333 81.00 841.68 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
88. Rplp1 ENSMUSG00000007892 81.00 841.68 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
89. Ago2 ENSMUSG00000036698 78.96 820.48 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
90. Cox8a ENSMUSG00000035885 78.28 813.41 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
91. Sub1 ENSMUSG00000022205 78.28 813.41 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
92. Son ENSMUSG00000022961 76.92 799.28 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
93. Fscn1 ENSMUSG00000029581 76.24 792.22 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
94. Morf4l2 ENSMUSG00000031422 76.24 792.22 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
95. Plagl1 ENSMUSG00000019817 76.24 792.22 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
96. Ywhae ENSMUSG00000020849 76.24 792.22 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
97. Rrm2 ENSMUSG00000020649 75.56 785.15 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
98. Tmpo ENSMUSG00000019961 75.56 785.15 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
99. Gm8292 ENSMUSG00000100215 74.87 777.98 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
100. H3f3b ENSMUSG00000016559 74.19 770.91 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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