Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s36.

Sample reads: 96,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3943.87 40976.50 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2978.55 30946.90 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2797.64 29067.26 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2648.82 27521.03 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 2576.45 26769.11 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 2450.84 25464.03 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1376.97 14306.61 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 1018.57 10582.86 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. mt-Nd3 ENSMUSG00000064360 946.20 9830.94 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. mt-Co3 ENSMUSG00000064358 806.25 8376.87 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. Actb ENSMUSG00000029580 768.02 7979.67 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. Eef1a1 ENSMUSG00000037742 728.42 7568.23 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. Mdk ENSMUSG00000027239 722.28 7504.43 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. Igf2 ENSMUSG00000048583 669.03 6951.17 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. mt-Nd2 ENSMUSG00000064345 656.74 6823.48 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
16. Hbb-y ENSMUSG00000052187 574.14 5965.27 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
17. Gm13340 ENSMUSG00000083563 382.99 3979.24 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Hba-a1 ENSMUSG00000069919 332.47 3454.34 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
19. Cdkn1c ENSMUSG00000037664 313.35 3255.68 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
20. Hba-x ENSMUSG00000055609 303.79 3156.35 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
21. mt-Rnr2 ENSMUSG00000064339 294.92 3064.20 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
22. Tuba1b ENSMUSG00000023004 288.78 3000.40 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
23. Ubb ENSMUSG00000019505 262.83 2730.78 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
24. Cfl1 ENSMUSG00000056201 255.32 2652.75 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Tpt1 ENSMUSG00000060126 243.72 2532.23 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
26. Tubb5 ENSMUSG00000001525 241.67 2510.93 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
27. mt-Nd5 ENSMUSG00000064367 238.26 2475.50 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
28. Rpsa ENSMUSG00000032518 234.84 2439.97 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
29. Npm1 ENSMUSG00000057113 232.80 2418.77 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
30. Nedd4 ENSMUSG00000032216 202.76 2106.66 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
31. Eif4g2 ENSMUSG00000005610 191.83 1993.10 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
32. Hsp90ab1 ENSMUSG00000023944 186.37 1936.37 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
33. Tmsb4x ENSMUSG00000049775 185.69 1929.30 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
34. Pkm ENSMUSG00000032294 182.28 1893.87 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
35. Chchd2 ENSMUSG00000070493 179.55 1865.51 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
36. Atp5g3 ENSMUSG00000018770 176.13 1829.98 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
37. Hmga2 ENSMUSG00000056758 172.72 1794.55 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
38. Rpl23 ENSMUSG00000071415 166.58 1730.75 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
39. Rpl4 ENSMUSG00000032399 165.89 1723.58 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
40. Grb10 ENSMUSG00000020176 163.16 1695.22 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
41. Pcbp1 ENSMUSG00000051695 157.02 1631.43 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
42. Hba-a2 ENSMUSG00000069917 154.97 1610.13 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
43. Rpl18a ENSMUSG00000045128 152.24 1581.76 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
44. Hnrnpc ENSMUSG00000060373 150.87 1567.53 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
45. Hbb-bh1 ENSMUSG00000052217 147.46 1532.10 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
46. Eef1b2 ENSMUSG00000025967 146.78 1525.03 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
47. Eif5a ENSMUSG00000078812 144.73 1503.73 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
48. Rps3a1 ENSMUSG00000028081 144.05 1496.67 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
49. Col3a1 ENSMUSG00000026043 142.68 1482.43 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
50. Rps26 ENSMUSG00000025362 142.68 1482.43 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
51. Myl6 ENSMUSG00000090841 141.32 1468.30 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
52. Rps20 ENSMUSG00000028234 140.63 1461.13 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
53. Fkbp1a ENSMUSG00000032966 137.90 1432.77 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
54. Hmgn1 ENSMUSG00000040681 133.81 1390.28 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
55. Actc1 ENSMUSG00000068614 129.71 1347.68 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
56. Crabp1 ENSMUSG00000032291 128.34 1333.44 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
57. Banf1 ENSMUSG00000024844 124.25 1290.95 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
58. Marcks ENSMUSG00000069662 123.57 1283.88 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
59. Hsp90aa1 ENSMUSG00000021270 122.20 1269.65 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
60. Ran ENSMUSG00000029430 121.52 1262.58 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
61. Rps4x ENSMUSG00000031320 120.15 1248.35 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
62. Ndufa12 ENSMUSG00000020022 117.42 1219.98 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
63. Ybx1 ENSMUSG00000028639 117.42 1219.98 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
64. Paics ENSMUSG00000029247 116.06 1205.85 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
65. Pbx1 ENSMUSG00000052534 114.01 1184.55 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
66. Ywhab ENSMUSG00000018326 111.96 1163.26 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
67. Trim28 ENSMUSG00000005566 111.28 1156.19 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
68. U2af2 ENSMUSG00000030435 110.59 1149.02 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
69. Ywhae ENSMUSG00000020849 109.91 1141.96 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
70. Cdk4 ENSMUSG00000006728 109.23 1134.89 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
71. Rps5 ENSMUSG00000012848 108.55 1127.83 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
72. Acta2 ENSMUSG00000035783 107.18 1113.59 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
73. Gm5805 ENSMUSG00000061848 105.82 1099.46 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
74. Rpl37 ENSMUSG00000041841 102.40 1063.93 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
75. H3f3b ENSMUSG00000016559 98.99 1028.50 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
76. Tmsb10 ENSMUSG00000079523 98.99 1028.50 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
77. Meg3 ENSMUSG00000021268 97.62 1014.26 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
78. Rplp1 ENSMUSG00000007892 97.62 1014.26 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
79. Rpl32 ENSMUSG00000057841 96.26 1000.13 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
80. Pabpc1 ENSMUSG00000022283 91.48 950.47 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
81. Peg3 ENSMUSG00000002265 91.48 950.47 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
82. Anp32b ENSMUSG00000028333 90.80 943.40 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
83. Gm14586 ENSMUSG00000083621 88.07 915.04 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
84. Sub1 ENSMUSG00000022205 86.70 900.81 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
85. Eef2 ENSMUSG00000034994 83.97 872.44 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
86. Fscn1 ENSMUSG00000029581 83.97 872.44 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
87. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 83.97 872.44 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
88. Tecr ENSMUSG00000031708 83.97 872.44 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
89. Fkbp4 ENSMUSG00000030357 83.29 865.38 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
90. Rps9 ENSMUSG00000006333 83.29 865.38 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
91. Rrm2 ENSMUSG00000020649 83.29 865.38 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
92. Tuba1a ENSMUSG00000072235 82.60 858.21 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
93. Gm14303 ENSMUSG00000081344 81.92 851.14 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
94. Gm9844 ENSMUSG00000091955 81.92 851.14 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
95. Igfbp5 ENSMUSG00000026185 81.92 851.14 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
96. Plagl1 ENSMUSG00000019817 81.24 844.08 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
97. Morf4l2 ENSMUSG00000031422 78.51 815.71 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
98. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 77.83 808.65 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
99. Prdx1 ENSMUSG00000028691 77.83 808.65 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
100. Hnrnpa0 ENSMUSG00000007836 77.14 801.48 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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