Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s35.

Sample reads: 96,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3784.10 39321.01 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2485.21 25824.10 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2450.57 25464.15 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 2374.80 24676.82 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Co2 ENSMUSG00000064354 2256.46 23447.13 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 2161.93 22464.86 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1321.98 13736.84 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 1035.50 10760.00 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. mt-Nd3 ENSMUSG00000064360 889.02 9237.91 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. Actb ENSMUSG00000029580 874.59 9087.96 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Rnr2 ENSMUSG00000064339 860.15 8937.92 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
12. mt-Co3 ENSMUSG00000064358 805.31 8368.07 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. Eef1a1 ENSMUSG00000037742 683.36 7100.87 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. Igf2 ENSMUSG00000048583 667.48 6935.86 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. Mdk ENSMUSG00000027239 643.67 6688.45 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. mt-Nd2 ENSMUSG00000064345 612.64 6366.01 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
17. Hbb-y ENSMUSG00000052187 505.84 5256.24 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
18. Gm13340 ENSMUSG00000083563 367.30 3816.66 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Hba-x ENSMUSG00000055609 332.66 3456.71 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
20. Cdkn1c ENSMUSG00000037664 323.28 3359.24 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
21. Hmga2 ENSMUSG00000056758 300.19 3119.31 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
22. Hba-a1 ENSMUSG00000069919 284.31 2954.30 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
23. Tuba1b ENSMUSG00000023004 269.88 2804.35 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Tubb5 ENSMUSG00000001525 262.66 2729.33 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
25. Cfl1 ENSMUSG00000056201 254.00 2639.34 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
26. mt-Nd5 ENSMUSG00000064367 239.57 2489.40 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
27. Tpt1 ENSMUSG00000060126 220.81 2294.46 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
28. Npm1 ENSMUSG00000057113 220.09 2286.98 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
29. Nedd4 ENSMUSG00000032216 204.21 2121.97 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
30. Chchd2 ENSMUSG00000070493 201.33 2092.04 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
31. Rpsa ENSMUSG00000032518 199.88 2076.98 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
32. Ubb ENSMUSG00000019505 184.73 1919.55 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
33. Pkm ENSMUSG00000032294 181.84 1889.52 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
34. Ybx1 ENSMUSG00000028639 158.75 1649.59 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
35. Eif4g2 ENSMUSG00000005610 157.31 1634.63 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
36. Hsp90ab1 ENSMUSG00000023944 156.59 1627.14 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
37. Rps20 ENSMUSG00000028234 152.98 1589.63 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
38. Atp5g3 ENSMUSG00000018770 149.37 1552.12 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
39. Ywhab ENSMUSG00000018326 149.37 1552.12 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
40. Grb10 ENSMUSG00000020176 147.21 1529.68 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
41. Peg3 ENSMUSG00000002265 145.76 1514.61 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
42. Rpl4 ENSMUSG00000032399 145.76 1514.61 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
43. Tmsb4x ENSMUSG00000049775 139.99 1454.65 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
44. Rpl23 ENSMUSG00000071415 139.27 1447.17 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
45. Pbx1 ENSMUSG00000052534 136.38 1417.14 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
46. Eif5a ENSMUSG00000078812 134.94 1402.18 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
47. Col3a1 ENSMUSG00000026043 134.22 1394.70 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
48. Meg3 ENSMUSG00000021268 131.33 1364.66 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
49. Set ENSMUSG00000054766 131.33 1364.66 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
50. Eef1b2 ENSMUSG00000025967 128.45 1334.74 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
51. Rps26 ENSMUSG00000025362 124.84 1297.23 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
52. Hba-a2 ENSMUSG00000069917 123.39 1282.16 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
53. Pcbp1 ENSMUSG00000051695 123.39 1282.16 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
54. Hnrnpc ENSMUSG00000060373 116.18 1207.24 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
55. Trim28 ENSMUSG00000005566 111.85 1162.25 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
56. Myl6 ENSMUSG00000090841 108.96 1132.22 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
57. Fscn1 ENSMUSG00000029581 107.52 1117.25 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
58. Marcks ENSMUSG00000069662 107.52 1117.25 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
59. Rpl37 ENSMUSG00000041841 104.63 1087.22 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
60. Ran ENSMUSG00000029430 103.91 1079.74 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
61. Actc1 ENSMUSG00000068614 103.19 1072.26 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
62. Banf1 ENSMUSG00000024844 102.47 1064.78 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
63. Hsp90aa1 ENSMUSG00000021270 101.75 1057.30 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
64. Rps4x ENSMUSG00000031320 101.75 1057.30 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
65. Rps5 ENSMUSG00000012848 101.75 1057.30 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
66. Gm14303 ENSMUSG00000081344 101.02 1049.71 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
67. Hbb-bh1 ENSMUSG00000052217 101.02 1049.71 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
68. Gm10800 ENSMUSG00000075014 99.58 1034.75 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
69. Rps3a1 ENSMUSG00000028081 98.86 1027.27 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
70. Hmgn1 ENSMUSG00000040681 98.14 1019.78 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
71. Anp32b ENSMUSG00000028333 97.42 1012.30 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
72. Rps9 ENSMUSG00000006333 96.70 1004.82 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
73. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 95.25 989.75 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
74. Rpl18a ENSMUSG00000045128 94.53 982.27 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
75. Crabp1 ENSMUSG00000032291 93.09 967.31 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
76. Fkbp1a ENSMUSG00000032966 93.09 967.31 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
77. Rpl32 ENSMUSG00000057841 93.09 967.31 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
78. U2af2 ENSMUSG00000030435 93.09 967.31 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
79. Pabpc1 ENSMUSG00000022283 90.20 937.28 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
80. Paics ENSMUSG00000029247 90.20 937.28 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
81. Gm9844 ENSMUSG00000091955 89.48 929.80 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
82. Hnrnpa2b1 ENSMUSG00000004980 88.76 922.32 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
83. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 88.76 922.32 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
84. Ywhae ENSMUSG00000020849 88.76 922.32 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
85. Ccnd2 ENSMUSG00000000184 86.59 899.77 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
86. Tmsb10 ENSMUSG00000079523 86.59 899.77 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
87. Morf4l2 ENSMUSG00000031422 85.87 892.28 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
88. Wbp5 84.43 877.32 WW domain binding protein 5
89. Plagl1 ENSMUSG00000019817 83.71 869.84 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
90. Rpl8 ENSMUSG00000003970 83.71 869.84 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
91. H3f3b ENSMUSG00000016559 82.98 862.25 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
92. Marcksl1 ENSMUSG00000047945 82.26 854.77 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
93. Rplp1 ENSMUSG00000007892 82.26 854.77 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
94. Gm5805 ENSMUSG00000061848 81.54 847.29 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
95. Igfbp5 ENSMUSG00000026185 81.54 847.29 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
96. Gm15459 ENSMUSG00000100801 80.82 839.81 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
97. Morf4l1 ENSMUSG00000062270 80.82 839.81 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
98. Ndufa12 ENSMUSG00000020022 80.10 832.33 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
99. Tpm4 ENSMUSG00000031799 77.93 809.78 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
100. Ago2 ENSMUSG00000036698 76.49 794.82 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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