Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s34.

Sample reads: 96,262. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4351.27 45203.05 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Nd1 ENSMUSG00000064341 2630.74 27329.37 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
3. mt-Atp6 ENSMUSG00000064357 2616.87 27185.29 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 2608.54 27098.75 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Co2 ENSMUSG00000064354 2471.18 25671.79 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. Ptma ENSMUSG00000026238 2462.85 25585.25 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
7. mt-Co1 ENSMUSG00000064351 1375.04 14284.57 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd3 ENSMUSG00000064360 1037.87 10781.89 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. H19 ENSMUSG00000000031 971.27 10090.01 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. mt-Co3 ENSMUSG00000064358 799.21 8302.57 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. Eef1a1 ENSMUSG00000037742 722.90 7509.83 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
12. mt-Rnr2 ENSMUSG00000064339 717.35 7452.17 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
13. Actb ENSMUSG00000029580 661.85 6875.61 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Igf2 ENSMUSG00000048583 618.84 6428.80 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. mt-Nd2 ENSMUSG00000064345 599.41 6226.96 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
16. Mdk ENSMUSG00000027239 552.23 5736.83 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. Hbb-y ENSMUSG00000052187 457.88 4756.67 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
18. Gm13340 ENSMUSG00000083563 367.69 3819.74 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Tuba1b ENSMUSG00000023004 302.48 3142.31 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
20. Hmga2 ENSMUSG00000056758 289.99 3012.55 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
21. Hba-a1 ENSMUSG00000069919 284.44 2954.90 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
22. mt-Nd5 ENSMUSG00000064367 276.12 2868.47 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
23. Npm1 ENSMUSG00000057113 231.72 2407.22 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Cfl1 ENSMUSG00000056201 228.94 2378.34 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Hba-x ENSMUSG00000055609 227.55 2363.90 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
26. Ubb ENSMUSG00000019505 224.78 2335.12 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
27. Nedd4 ENSMUSG00000032216 201.19 2090.06 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
28. Tpt1 ENSMUSG00000060126 197.03 2046.84 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
29. Cdkn1c ENSMUSG00000037664 190.09 1974.74 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
30. Rpsa ENSMUSG00000032518 188.70 1960.31 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
31. Gm10800 ENSMUSG00000075014 183.15 1902.65 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
32. Eif4g2 ENSMUSG00000005610 180.38 1873.87 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
33. Pkm ENSMUSG00000032294 177.60 1844.99 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
34. Grb10 ENSMUSG00000020176 172.05 1787.34 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
35. Set ENSMUSG00000054766 167.89 1744.12 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
36. Tubb5 ENSMUSG00000001525 167.89 1744.12 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
37. Chchd2 ENSMUSG00000070493 163.73 1700.90 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
38. Hsp90ab1 ENSMUSG00000023944 163.73 1700.90 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
39. Atp5g3 ENSMUSG00000018770 162.34 1686.46 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
40. Peg3 ENSMUSG00000002265 160.95 1672.02 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
41. Rpl23 ENSMUSG00000071415 159.57 1657.69 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
42. Ywhab ENSMUSG00000018326 152.63 1585.59 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
43. Hnrnpc ENSMUSG00000060373 149.85 1556.71 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
44. Rpl4 ENSMUSG00000032399 145.69 1513.50 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
45. Hba-a2 ENSMUSG00000069917 140.14 1455.84 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
46. Ybx1 ENSMUSG00000028639 140.14 1455.84 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
47. Pbx1 ENSMUSG00000052534 135.98 1412.62 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
48. Rpl18a ENSMUSG00000045128 135.98 1412.62 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
49. Rps4x ENSMUSG00000031320 133.20 1383.74 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
50. Col3a1 ENSMUSG00000026043 131.81 1369.30 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
51. Hbb-bh1 ENSMUSG00000052217 130.43 1354.97 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
52. Tmsb4x ENSMUSG00000049775 127.65 1326.09 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
53. Rpl37 ENSMUSG00000041841 124.88 1297.31 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
54. Rps26 ENSMUSG00000025362 122.10 1268.43 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
55. Hsp90aa1 ENSMUSG00000021270 117.94 1225.22 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
56. Ccnd2 ENSMUSG00000000184 115.16 1196.34 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
57. Rps20 ENSMUSG00000028234 115.16 1196.34 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
58. Rps5 ENSMUSG00000012848 115.16 1196.34 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
59. 2810417H13Rik 113.78 1182.00 RIKEN cDNA 2810417H13 gene
60. Ran ENSMUSG00000029430 113.78 1182.00 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
61. Rps3a1 ENSMUSG00000028081 108.23 1124.34 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
62. Marcks ENSMUSG00000069662 106.84 1109.90 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
63. U2af2 ENSMUSG00000030435 106.84 1109.90 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
64. Rplp1 ENSMUSG00000007892 105.45 1095.46 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
65. Banf1 ENSMUSG00000024844 104.06 1081.02 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
66. H3f3b ENSMUSG00000016559 102.68 1066.69 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
67. Myl6 ENSMUSG00000090841 102.68 1066.69 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
68. Rpl32 ENSMUSG00000057841 102.68 1066.69 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
69. Rpl41 ENSMUSG00000093674 101.29 1052.25 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
70. Trim28 ENSMUSG00000005566 97.13 1009.03 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
71. Ywhae ENSMUSG00000020849 97.13 1009.03 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
72. Fkbp1a ENSMUSG00000032966 95.74 994.59 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
73. Gm5805 ENSMUSG00000061848 95.74 994.59 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
74. Eef1b2 ENSMUSG00000025967 94.35 980.15 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
75. Eif5a ENSMUSG00000078812 94.35 980.15 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
76. Sub1 ENSMUSG00000022205 92.96 965.71 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
77. Hmgn1 ENSMUSG00000040681 91.58 951.38 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
78. Meg3 ENSMUSG00000021268 91.58 951.38 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
79. Wbp5 91.58 951.38 WW domain binding protein 5
80. Rpl39-ps ENSMUSG00000036305 90.19 936.94 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
81. Col1a2 ENSMUSG00000029661 86.03 893.72 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
82. Actc1 ENSMUSG00000068614 84.64 879.28 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
83. Hnrnph1 ENSMUSG00000007850 84.64 879.28 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
84. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 84.64 879.28 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
85. Sf3b1 ENSMUSG00000025982 84.64 879.28 splicing factor 3b, subunit 1 [Source:MGI Symbol;Acc:MGI:1932339]
86. Tmpo ENSMUSG00000019961 84.64 879.28 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
87. Tpm1 ENSMUSG00000032366 84.64 879.28 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
88. Ddx5 ENSMUSG00000020719 83.25 864.84 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
89. Malat1 ENSMUSG00000092341 83.25 864.84 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
90. Morf4l1 ENSMUSG00000062270 83.25 864.84 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
91. Pcbp1 ENSMUSG00000051695 83.25 864.84 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
92. Sfpq ENSMUSG00000028820 83.25 864.84 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
93. Eef2 ENSMUSG00000034994 81.86 850.40 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
94. Pabpc1 ENSMUSG00000022283 81.86 850.40 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
95. Anp32b ENSMUSG00000028333 80.48 836.06 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
96. Gm14303 ENSMUSG00000081344 80.48 836.06 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
97. Plagl1 ENSMUSG00000019817 80.48 836.06 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
98. Fscn1 ENSMUSG00000029581 79.09 821.62 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
99. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 79.09 821.62 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
100. Kpnb1 ENSMUSG00000001440 79.09 821.62 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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