Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s31.

Sample reads: 96,253. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3594.28 37342.49 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 2551.14 26504.87 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. Ptma ENSMUSG00000026238 2491.21 25882.23 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Co2 ENSMUSG00000064354 2369.73 24620.12 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd1 ENSMUSG00000064341 2325.18 24157.27 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Nd4 ENSMUSG00000064363 2286.31 23753.44 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1343.60 13959.23 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 1000.21 10391.60 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. H19 ENSMUSG00000000031 996.16 10349.53 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. mt-Nd3 ENSMUSG00000064360 920.84 9566.99 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. Igf2 ENSMUSG00000048583 758.05 7875.70 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
12. mt-Co3 ENSMUSG00000064358 753.19 7825.21 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. Actb ENSMUSG00000029580 659.25 6849.23 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Mdk ENSMUSG00000027239 629.28 6537.85 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. mt-Nd2 ENSMUSG00000064345 596.89 6201.34 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
16. Eef1a1 ENSMUSG00000037742 533.72 5545.04 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. Hbb-y ENSMUSG00000052187 439.77 4568.96 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
18. Gm13340 ENSMUSG00000083563 384.70 3996.81 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Hmga2 ENSMUSG00000056758 317.48 3298.43 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
20. mt-Nd5 ENSMUSG00000064367 277.79 2886.08 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
21. Tuba1b ENSMUSG00000023004 260.78 2709.35 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
22. Tubb5 ENSMUSG00000001525 255.92 2658.86 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
23. Ubb ENSMUSG00000019505 248.64 2583.23 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
24. Cfl1 ENSMUSG00000056201 247.02 2566.39 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Hba-x ENSMUSG00000055609 238.11 2473.82 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
26. Npm1 ENSMUSG00000057113 235.68 2448.58 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
27. Rpsa ENSMUSG00000032518 226.77 2356.01 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
28. Ybx1 ENSMUSG00000028639 226.77 2356.01 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
29. Hba-a1 ENSMUSG00000069919 222.72 2313.93 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
30. Nedd4 ENSMUSG00000032216 221.10 2297.10 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
31. Tpt1 ENSMUSG00000060126 213.00 2212.95 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
32. Hsp90ab1 ENSMUSG00000023944 210.57 2187.70 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
33. Chchd2 ENSMUSG00000070493 204.90 2128.79 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
34. Set ENSMUSG00000054766 187.89 1952.07 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
35. Cdkn1c ENSMUSG00000037664 183.84 1909.99 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
36. Grb10 ENSMUSG00000020176 165.22 1716.54 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
37. Rpl4 ENSMUSG00000032399 165.22 1716.54 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
38. Peg3 ENSMUSG00000002265 163.60 1699.71 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
39. Pkm ENSMUSG00000032294 163.60 1699.71 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
40. Hnrnpc ENSMUSG00000060373 145.78 1514.57 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
41. Rpl23 ENSMUSG00000071415 144.97 1506.15 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
42. Eif4g2 ENSMUSG00000005610 143.35 1489.32 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
43. Eef1b2 ENSMUSG00000025967 142.54 1480.91 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
44. Rps26 ENSMUSG00000025362 141.73 1472.49 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
45. Ywhab ENSMUSG00000018326 140.11 1455.66 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
46. Atp5g3 ENSMUSG00000018770 139.30 1447.25 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
47. Col3a1 ENSMUSG00000026043 139.30 1447.25 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
48. Eif5a ENSMUSG00000078812 138.49 1438.83 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
49. Pcbp1 ENSMUSG00000051695 135.25 1405.17 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
50. Ran ENSMUSG00000029430 130.39 1354.68 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
51. Rps20 ENSMUSG00000028234 130.39 1354.68 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
52. Pabpc1 ENSMUSG00000022283 125.53 1304.18 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
53. Gm10800 ENSMUSG00000075014 123.10 1278.94 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
54. Hbb-bh1 ENSMUSG00000052217 119.05 1236.86 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
55. Col2a1 ENSMUSG00000022483 115.00 1194.78 collagen, type II, alpha 1 [Source:MGI Symbol;Acc:MGI:88452]
56. Malat1 ENSMUSG00000092341 115.00 1194.78 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
57. Hmgn1 ENSMUSG00000040681 114.19 1186.37 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
58. Marcks ENSMUSG00000069662 113.38 1177.95 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
59. Hsp90aa1 ENSMUSG00000021270 111.76 1161.12 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
60. Rps4x ENSMUSG00000031320 111.76 1161.12 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
61. Tmsb4x ENSMUSG00000049775 110.95 1152.71 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
62. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 108.52 1127.46 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
63. Paics ENSMUSG00000029247 107.71 1119.04 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
64. Ccnd2 ENSMUSG00000000184 106.91 1110.73 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
65. Fkbp1a ENSMUSG00000032966 106.10 1102.32 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
66. Gm14303 ENSMUSG00000081344 105.29 1093.90 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
67. Wbp5 105.29 1093.90 WW domain binding protein 5
68. Rpl18a ENSMUSG00000045128 103.67 1077.07 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
69. U2af2 ENSMUSG00000030435 103.67 1077.07 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
70. Rplp1 ENSMUSG00000007892 102.05 1060.24 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
71. Myl6 ENSMUSG00000090841 100.43 1043.41 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
72. Pbx1 ENSMUSG00000052534 100.43 1043.41 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
73. 2810417H13Rik 99.62 1034.99 RIKEN cDNA 2810417H13 gene
74. Hba-a2 ENSMUSG00000069917 98.81 1026.58 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
75. Fscn1 ENSMUSG00000029581 98.00 1018.16 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
76. Banf1 ENSMUSG00000024844 96.38 1001.33 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
77. Gm5805 ENSMUSG00000061848 95.57 992.92 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
78. Tcf4 ENSMUSG00000053477 94.76 984.50 transcription factor 4 [Source:MGI Symbol;Acc:MGI:98506]
79. Ywhae ENSMUSG00000020849 93.14 967.67 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
80. Anp32b ENSMUSG00000028333 92.33 959.26 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
81. H3f3b ENSMUSG00000016559 91.52 950.84 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
82. Hnrnpa0 ENSMUSG00000007836 91.52 950.84 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
83. Ago2 ENSMUSG00000036698 90.71 942.42 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
84. Hnrnpa2b1 ENSMUSG00000004980 90.71 942.42 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
85. Rps5 ENSMUSG00000012848 90.71 942.42 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
86. Son ENSMUSG00000022961 89.90 934.01 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
87. Uncx ENSMUSG00000029546 88.28 917.18 UNC homeobox [Source:MGI Symbol;Acc:MGI:108013]
88. Rpl32 ENSMUSG00000057841 86.66 900.35 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
89. Eef1g ENSMUSG00000071644 85.85 891.93 eukaryotic translation elongation factor 1 gamma [Source:MGI Symbol;Acc:MGI:1914410]
90. Gpc3 ENSMUSG00000055653 84.23 875.10 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
91. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 84.23 875.10 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
92. Rpl8 ENSMUSG00000003970 84.23 875.10 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
93. Rps3a1 ENSMUSG00000028081 82.61 858.27 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
94. Ndufa12 ENSMUSG00000020022 81.80 849.85 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
95. Meg3 ENSMUSG00000021268 78.56 816.19 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
96. Col1a2 ENSMUSG00000029661 77.75 807.78 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
97. Fkbp4 ENSMUSG00000030357 77.75 807.78 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
98. Tmpo ENSMUSG00000019961 77.75 807.78 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
99. Trim28 ENSMUSG00000005566 77.75 807.78 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
100. Actc1 ENSMUSG00000068614 76.94 799.36 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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