Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s30.

Sample reads: 96,255. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3585.94 37254.52 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3202.13 33267.10 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2479.14 25755.92 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2249.30 23368.10 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 2209.14 22950.87 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 2099.80 21814.93 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. H19 ENSMUSG00000000031 1258.54 13075.04 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
8. mt-Co1 ENSMUSG00000064351 1225.07 12727.32 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd3 ENSMUSG00000064360 851.30 8844.20 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. mt-Co3 ENSMUSG00000064358 762.04 7916.87 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. Actb ENSMUSG00000029580 760.92 7905.24 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. Igf2 ENSMUSG00000048583 726.34 7545.99 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
13. Eef1a1 ENSMUSG00000037742 612.53 6363.61 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. mt-Nd2 ENSMUSG00000064345 585.76 6085.49 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
15. mt-Rnr2 ENSMUSG00000064339 571.25 5934.75 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
16. Mdk ENSMUSG00000027239 536.66 5575.39 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. Gm13340 ENSMUSG00000083563 355.92 3697.67 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Hbb-y ENSMUSG00000052187 291.20 3025.29 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
19. Npm1 ENSMUSG00000057113 272.24 2828.32 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
20. Tpt1 ENSMUSG00000060126 258.85 2689.21 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
21. Nedd4 ENSMUSG00000032216 245.46 2550.10 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
22. Hmga2 ENSMUSG00000056758 242.11 2515.29 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
23. Tuba1b ENSMUSG00000023004 236.53 2457.32 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Rpsa ENSMUSG00000032518 230.96 2399.46 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
25. Pkm ENSMUSG00000032294 209.76 2179.21 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
26. Cfl1 ENSMUSG00000056201 207.52 2155.94 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
27. Ubb ENSMUSG00000019505 207.52 2155.94 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
28. Hsp90ab1 ENSMUSG00000023944 193.02 2005.30 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
29. mt-Nd5 ENSMUSG00000064367 191.90 1993.66 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
30. Tubb5 ENSMUSG00000001525 182.98 1900.99 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
31. Grb10 ENSMUSG00000020176 168.47 1750.24 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
32. Rpl18a ENSMUSG00000045128 164.01 1703.91 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
33. Chchd2 ENSMUSG00000070493 161.78 1680.74 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
34. Eif5a ENSMUSG00000078812 157.32 1634.41 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
35. Col3a1 ENSMUSG00000026043 155.09 1611.24 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
36. Eif4g2 ENSMUSG00000005610 155.09 1611.24 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
37. Ywhab ENSMUSG00000018326 153.97 1599.60 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
38. Cdkn1c ENSMUSG00000037664 152.85 1587.97 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
39. Rpl23 ENSMUSG00000071415 150.62 1564.80 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
40. Ybx1 ENSMUSG00000028639 148.39 1541.63 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
41. Hba-a1 ENSMUSG00000069919 147.28 1530.10 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
42. Peg3 ENSMUSG00000002265 145.04 1506.83 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
43. Eef1b2 ENSMUSG00000025967 143.93 1495.30 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
44. Rpl4 ENSMUSG00000032399 143.93 1495.30 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
45. Rps4x ENSMUSG00000031320 143.93 1495.30 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
46. Banf1 ENSMUSG00000024844 142.81 1483.66 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
47. Eef2 ENSMUSG00000034994 140.58 1460.49 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
48. Ran ENSMUSG00000029430 132.77 1379.35 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
49. Ccnd2 ENSMUSG00000000184 128.31 1333.02 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
50. Rps5 ENSMUSG00000012848 128.31 1333.02 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
51. Set ENSMUSG00000054766 128.31 1333.02 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
52. Atp5g3 ENSMUSG00000018770 127.19 1321.38 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
53. Hnrnpc ENSMUSG00000060373 126.08 1309.85 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
54. Rps26 ENSMUSG00000025362 122.73 1275.05 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
55. Gm10800 ENSMUSG00000075014 121.61 1263.41 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
56. Hmgn1 ENSMUSG00000040681 120.50 1251.88 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
57. Myl6 ENSMUSG00000090841 120.50 1251.88 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
58. Rps20 ENSMUSG00000028234 120.50 1251.88 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
59. Hba-x ENSMUSG00000055609 119.38 1240.25 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
60. Rpl37 ENSMUSG00000041841 119.38 1240.25 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
61. Trim28 ENSMUSG00000005566 119.38 1240.25 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
62. U2af2 ENSMUSG00000030435 119.38 1240.25 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
63. Fkbp1a ENSMUSG00000032966 117.15 1217.08 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
64. Rps3a1 ENSMUSG00000028081 117.15 1217.08 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
65. Tmsb4x ENSMUSG00000049775 113.80 1182.27 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
66. Pcbp1 ENSMUSG00000051695 111.57 1159.11 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
67. Paics ENSMUSG00000029247 108.23 1124.41 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
68. Tpm1 ENSMUSG00000032366 108.23 1124.41 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
69. Pabpc1 ENSMUSG00000022283 105.99 1101.14 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
70. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 105.99 1101.14 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
71. Gm5805 ENSMUSG00000061848 103.76 1077.97 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
72. Hnrnpa2b1 ENSMUSG00000004980 101.53 1054.80 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
73. Gm14303 ENSMUSG00000081344 100.42 1043.27 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
74. Rpl41 ENSMUSG00000093674 100.42 1043.27 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
75. Marcks ENSMUSG00000069662 99.30 1031.63 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
76. Morf4l2 ENSMUSG00000031422 97.07 1008.47 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
77. Rps9 ENSMUSG00000006333 97.07 1008.47 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
78. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 95.95 996.83 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
79. Gpc3 ENSMUSG00000055653 94.84 985.30 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
80. Ywhae ENSMUSG00000020849 94.84 985.30 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
81. Col2a1 ENSMUSG00000022483 93.72 973.66 collagen, type II, alpha 1 [Source:MGI Symbol;Acc:MGI:88452]
82. Hsp90aa1 ENSMUSG00000021270 92.61 962.13 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
83. Rpl32 ENSMUSG00000057841 92.61 962.13 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
84. 2810417H13Rik 91.49 950.49 RIKEN cDNA 2810417H13 gene
85. Rrm2 ENSMUSG00000020649 90.37 938.86 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
86. Serbp1 ENSMUSG00000036371 90.37 938.86 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
87. Calr ENSMUSG00000003814 89.26 927.33 calreticulin [Source:MGI Symbol;Acc:MGI:88252]
88. Tmpo ENSMUSG00000019961 89.26 927.33 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
89. Fkbp4 ENSMUSG00000030357 88.14 915.69 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
90. Rplp1 ENSMUSG00000007892 88.14 915.69 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
91. Ago2 ENSMUSG00000036698 87.03 904.16 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
92. Gm9844 ENSMUSG00000091955 87.03 904.16 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
93. Ndufc2 ENSMUSG00000030647 87.03 904.16 NADH:ubiquinone oxidoreductase subunit C2 [Source:MGI Symbol;Acc:MGI:1344370]
94. Anp32b ENSMUSG00000028333 85.91 892.52 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
95. Sfpq ENSMUSG00000028820 84.80 880.99 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
96. Meg3 ENSMUSG00000021268 83.68 869.36 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
97. Rpl8 ENSMUSG00000003970 83.68 869.36 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
98. Sub1 ENSMUSG00000022205 83.68 869.36 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
99. Kpnb1 ENSMUSG00000001440 82.56 857.72 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
100. Top2a ENSMUSG00000020914 82.56 857.72 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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