Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s29.

Sample reads: 96,252. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3444.75 35789.05 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3124.17 32458.40 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2441.50 25365.84 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2345.32 24366.58 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 2242.23 23295.53 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 2227.15 23138.86 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1296.18 13466.59 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. H19 ENSMUSG00000000031 1166.06 12114.72 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. Hbb-y ENSMUSG00000052187 1012.05 10514.64 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
10. mt-Nd3 ENSMUSG00000064360 783.87 8143.98 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. mt-Rnr2 ENSMUSG00000064339 707.18 7347.21 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
12. Eef1a1 ENSMUSG00000037742 685.81 7125.19 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
13. Igf2 ENSMUSG00000048583 685.18 7118.64 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
14. mt-Co3 ENSMUSG00000064358 671.35 6974.96 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. mt-Nd2 ENSMUSG00000064345 666.32 6922.70 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
16. Actb ENSMUSG00000029580 658.15 6837.81 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
17. Mdk ENSMUSG00000027239 549.40 5707.96 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. Hba-x ENSMUSG00000055609 479.00 4976.55 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
19. Hba-a1 ENSMUSG00000069919 395.39 4107.88 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
20. Gm13340 ENSMUSG00000083563 377.79 3925.03 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. Hbb-bh1 ENSMUSG00000052217 262.13 2723.39 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
22. Tuba1b ENSMUSG00000023004 260.24 2703.75 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
23. Rpsa ENSMUSG00000032518 254.58 2644.95 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
24. Npm1 ENSMUSG00000057113 253.33 2631.96 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
25. Tpt1 ENSMUSG00000060126 243.90 2533.99 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
26. Ubb ENSMUSG00000019505 233.84 2429.47 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
27. Cfl1 ENSMUSG00000056201 229.44 2383.75 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
28. Hmga2 ENSMUSG00000056758 228.18 2370.66 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
29. mt-Nd5 ENSMUSG00000064367 225.04 2338.04 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
30. Nedd4 ENSMUSG00000032216 211.21 2194.36 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
31. Hba-a2 ENSMUSG00000069917 189.84 1972.33 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
32. Rpl4 ENSMUSG00000032399 179.15 1861.27 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
33. Eif4g2 ENSMUSG00000005610 175.38 1822.10 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
34. Ybx1 ENSMUSG00000028639 170.98 1776.39 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
35. Tubb5 ENSMUSG00000001525 166.58 1730.67 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
36. Hsp90ab1 ENSMUSG00000023944 164.69 1711.04 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
37. Tmsb4x ENSMUSG00000049775 164.07 1704.60 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
38. Pkm ENSMUSG00000032294 159.04 1652.34 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
39. Cdkn1c ENSMUSG00000037664 154.64 1606.62 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
40. Eif5a ENSMUSG00000078812 153.38 1593.53 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
41. Col3a1 ENSMUSG00000026043 147.09 1528.18 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
42. Set ENSMUSG00000054766 147.09 1528.18 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
43. Eef1b2 ENSMUSG00000025967 145.84 1515.20 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
44. Atp5g3 ENSMUSG00000018770 142.69 1482.47 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
45. Chchd2 ENSMUSG00000070493 141.44 1469.48 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
46. Pcbp1 ENSMUSG00000051695 140.81 1462.94 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
47. Rpl23 ENSMUSG00000071415 139.55 1449.85 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
48. Grb10 ENSMUSG00000020176 136.41 1417.22 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
49. Hnrnpc ENSMUSG00000060373 136.41 1417.22 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
50. Rps26 ENSMUSG00000025362 135.78 1410.68 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
51. Ywhab ENSMUSG00000018326 134.52 1397.59 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
52. Ran ENSMUSG00000029430 132.64 1378.06 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
53. Myl6 ENSMUSG00000090841 132.01 1371.51 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
54. Pabpc1 ENSMUSG00000022283 128.86 1338.78 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
55. Banf1 ENSMUSG00000024844 126.35 1312.71 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
56. U2af2 ENSMUSG00000030435 122.58 1273.54 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
57. Rps20 ENSMUSG00000028234 120.06 1247.36 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
58. Hsp90aa1 ENSMUSG00000021270 118.81 1234.37 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
59. Rps4x ENSMUSG00000031320 115.66 1201.64 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
60. Gm14303 ENSMUSG00000081344 111.89 1162.48 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
61. Marcks ENSMUSG00000069662 111.89 1162.48 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
62. mt-Rnr1 ENSMUSG00000064337 111.26 1155.93 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
63. Hmgn1 ENSMUSG00000040681 110.01 1142.94 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
64. Fkbp1a ENSMUSG00000032966 106.86 1110.22 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
65. Rps5 ENSMUSG00000012848 106.86 1110.22 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
66. Peg3 ENSMUSG00000002265 103.72 1077.59 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
67. Ywhae ENSMUSG00000020849 100.58 1044.97 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
68. Morf4l2 ENSMUSG00000031422 96.18 999.26 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
69. Anp32b ENSMUSG00000028333 95.55 992.71 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
70. Hnrnpa0 ENSMUSG00000007836 94.92 986.17 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
71. Rps3a1 ENSMUSG00000028081 94.29 979.62 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
72. Rpl18a ENSMUSG00000045128 91.78 953.54 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
73. Rpl9-ps6 ENSMUSG00000062456 91.78 953.54 ribosomal protein L9, pseudogene 6 [Source:MGI Symbol;Acc:MGI:3642682]
74. Rrm2 ENSMUSG00000020649 91.15 947.00 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
75. Paics ENSMUSG00000029247 90.52 940.45 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
76. Cox8a ENSMUSG00000035885 89.89 933.91 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
77. Morf4l1 ENSMUSG00000062270 89.89 933.91 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
78. Trim28 ENSMUSG00000005566 89.26 927.36 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
79. Ccnd2 ENSMUSG00000000184 88.63 920.82 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
80. Rplp1 ENSMUSG00000007892 88.00 914.27 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
81. Hbb-bt ENSMUSG00000073940 87.38 907.83 hemoglobin, beta adult t chain [Source:MGI Symbol;Acc:MGI:5474850]
82. Tmsb10 ENSMUSG00000079523 87.38 907.83 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
83. Col1a2 ENSMUSG00000029661 86.75 901.28 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
84. Gm5805 ENSMUSG00000061848 86.12 894.74 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
85. Rps9 ENSMUSG00000006333 86.12 894.74 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
86. Rpl37 ENSMUSG00000041841 85.49 888.19 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
87. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 85.49 888.19 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
88. H3f3b ENSMUSG00000016559 84.86 881.65 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
89. Marcksl1 ENSMUSG00000047945 84.23 875.10 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
90. Cdk4 ENSMUSG00000006728 83.60 868.56 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
91. Rpl32 ENSMUSG00000057841 83.60 868.56 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
92. Meg3 ENSMUSG00000021268 82.98 862.12 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
93. Hnrnpa2b1 ENSMUSG00000004980 82.35 855.57 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
94. Kpnb1 ENSMUSG00000001440 82.35 855.57 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
95. Gm14586 ENSMUSG00000083621 81.09 842.48 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
96. Sfpq ENSMUSG00000028820 79.83 829.39 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
97. Serbp1 ENSMUSG00000036371 79.20 822.84 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
98. Tmpo ENSMUSG00000019961 79.20 822.84 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
99. Ddx5 ENSMUSG00000020719 78.58 816.40 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
100. Gm5963 ENSMUSG00000052192 78.58 816.40 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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