Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s28.

Sample reads: 96,256. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3029.36 31471.78 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 2331.83 24225.20 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Nd4 ENSMUSG00000064363 2107.76 21897.35 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Co2 ENSMUSG00000064354 2081.18 21621.22 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd1 ENSMUSG00000064341 2036.87 21160.88 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Rnr2 ENSMUSG00000064339 1826.73 18977.76 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
7. Ptma ENSMUSG00000026238 1795.08 18648.95 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
8. Hbb-y ENSMUSG00000052187 1346.94 13993.25 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
9. mt-Co1 ENSMUSG00000064351 1274.79 13243.69 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. H19 ENSMUSG00000000031 832.98 8653.76 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. mt-Co3 ENSMUSG00000064358 776.01 8061.91 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. Igf2 ENSMUSG00000048583 741.83 7706.81 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
13. mt-Nd3 ENSMUSG00000064360 736.77 7654.25 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Hba-a1 ENSMUSG00000069919 673.47 6996.63 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
15. Hba-x ENSMUSG00000055609 589.92 6128.63 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
16. Eef1a1 ENSMUSG00000037742 545.61 5668.30 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. Actb ENSMUSG00000029580 519.03 5392.16 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
18. mt-Nd2 ENSMUSG00000064345 497.51 5168.59 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
19. Mdk ENSMUSG00000027239 479.79 4984.50 midkine [Source:MGI Symbol;Acc:MGI:96949]
20. mt-Nd5 ENSMUSG00000064367 400.03 4155.88 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
21. Hba-a2 ENSMUSG00000069917 373.45 3879.74 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
22. Hbb-bh1 ENSMUSG00000052217 341.80 3550.93 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
23. Gm13340 ENSMUSG00000083563 320.28 3327.36 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
24. Npm1 ENSMUSG00000057113 291.16 3024.84 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
25. Hmga2 ENSMUSG00000056758 279.77 2906.51 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
26. Tpt1 ENSMUSG00000060126 259.51 2696.03 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
27. Rpsa ENSMUSG00000032518 256.98 2669.75 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
28. Cfl1 ENSMUSG00000056201 254.45 2643.46 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
29. Ubb ENSMUSG00000019505 246.86 2564.61 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
30. Nedd4 ENSMUSG00000032216 244.32 2538.22 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
31. Tuba1b ENSMUSG00000023004 230.40 2393.61 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
32. Pkm ENSMUSG00000032294 220.27 2288.37 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
33. Tubb5 ENSMUSG00000001525 211.41 2196.32 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
34. Rpl4 ENSMUSG00000032399 201.28 2091.08 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
35. Ybx1 ENSMUSG00000028639 198.75 2064.80 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
36. Set ENSMUSG00000054766 179.76 1867.51 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
37. Gm10800 ENSMUSG00000075014 173.43 1801.75 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
38. Grb10 ENSMUSG00000020176 172.17 1788.66 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
39. Hsp90ab1 ENSMUSG00000023944 169.63 1762.27 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
40. Eif4g2 ENSMUSG00000005610 164.57 1709.70 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
41. Atp5g3 ENSMUSG00000018770 158.24 1643.94 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
42. Cdkn1c ENSMUSG00000037664 158.24 1643.94 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
43. Chchd2 ENSMUSG00000070493 155.71 1617.66 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
44. Rps26 ENSMUSG00000025362 154.44 1604.47 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
45. Rpl23 ENSMUSG00000071415 149.38 1551.90 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
46. Hnrnpc ENSMUSG00000060373 148.11 1538.70 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
47. Hsp90aa1 ENSMUSG00000021270 143.05 1486.14 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
48. Rps20 ENSMUSG00000028234 141.78 1472.94 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
49. Rps4x ENSMUSG00000031320 141.78 1472.94 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
50. Tmsb4x ENSMUSG00000049775 140.52 1459.85 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
51. Eef1b2 ENSMUSG00000025967 139.25 1446.66 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
52. Eif5a ENSMUSG00000078812 134.19 1394.09 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
53. Rpl18a ENSMUSG00000045128 134.19 1394.09 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
54. Hbb-bt ENSMUSG00000073940 132.92 1380.90 hemoglobin, beta adult t chain [Source:MGI Symbol;Acc:MGI:5474850]
55. Pcbp1 ENSMUSG00000051695 129.12 1341.42 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
56. Peg3 ENSMUSG00000002265 124.06 1288.85 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
57. Marcks ENSMUSG00000069662 122.79 1275.66 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
58. Ran ENSMUSG00000029430 121.53 1262.57 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
59. Anp32b ENSMUSG00000028333 120.26 1249.37 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
60. Rpl37 ENSMUSG00000041841 117.73 1223.09 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
61. Malat1 ENSMUSG00000092341 115.20 1196.80 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
62. Pabpc1 ENSMUSG00000022283 113.93 1183.61 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
63. U2af2 ENSMUSG00000030435 112.67 1170.52 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
64. Gm14303 ENSMUSG00000081344 108.87 1131.04 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
65. Rps9 ENSMUSG00000006333 105.07 1091.56 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
66. Col3a1 ENSMUSG00000026043 101.27 1052.09 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
67. Ccnd2 ENSMUSG00000000184 100.01 1039.00 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
68. Hmgn1 ENSMUSG00000040681 97.48 1012.71 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
69. Hnrnpa2b1 ENSMUSG00000004980 97.48 1012.71 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
70. Fscn1 ENSMUSG00000029581 96.21 999.52 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
71. Gm17132 ENSMUSG00000061331 96.21 999.52 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
72. Gm5805 ENSMUSG00000061848 94.94 986.32 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
73. Calm1 ENSMUSG00000001175 93.68 973.23 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
74. Rps3a1 ENSMUSG00000028081 93.68 973.23 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
75. Col1a2 ENSMUSG00000029661 92.41 960.04 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
76. Rplp1 ENSMUSG00000007892 92.41 960.04 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
77. Tmpo ENSMUSG00000019961 92.41 960.04 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
78. Basp1 ENSMUSG00000045763 91.15 946.95 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
79. Trim28 ENSMUSG00000005566 91.15 946.95 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
80. Rpl41 ENSMUSG00000093674 89.88 933.76 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
81. Rps5 ENSMUSG00000012848 89.88 933.76 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
82. Eef2 ENSMUSG00000034994 88.61 920.56 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
83. Sub1 ENSMUSG00000022205 88.61 920.56 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
84. Wbp5 88.61 920.56 WW domain binding protein 5
85. mt-Rnr1 ENSMUSG00000064337 88.61 920.56 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
86. Rpl32 ENSMUSG00000057841 87.35 907.47 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
87. Ywhab ENSMUSG00000018326 86.08 894.28 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
88. Gm15459 ENSMUSG00000100801 84.82 881.19 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
89. Fkbp1a ENSMUSG00000032966 83.55 867.99 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
90. Son ENSMUSG00000022961 83.55 867.99 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
91. Lamp1 ENSMUSG00000031447 82.29 854.90 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
92. Ywhae ENSMUSG00000020849 82.29 854.90 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
93. Cdk4 ENSMUSG00000006728 81.02 841.71 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
94. Hnrnpa0 ENSMUSG00000007836 81.02 841.71 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
95. Myl6 ENSMUSG00000090841 81.02 841.71 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
96. Morf4l1 ENSMUSG00000062270 79.75 828.52 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
97. Pdia6 ENSMUSG00000020571 79.75 828.52 protein disulfide isomerase associated 6 [Source:MGI Symbol;Acc:MGI:1919103]
98. Atxn7l3b ENSMUSG00000074748 78.49 815.43 ataxin 7-like 3B [Source:MGI Symbol;Acc:MGI:1914971]
99. Rpl39-ps ENSMUSG00000036305 78.49 815.43 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
100. Ddx5 ENSMUSG00000020719 77.22 802.23 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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