Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s78.

Sample reads: 96,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3949.62 41037.65 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3861.86 40125.80 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Nd4 ENSMUSG00000064363 2323.31 24139.84 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Nd1 ENSMUSG00000064341 2225.21 23120.55 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Atp6 ENSMUSG00000064357 2121.96 22047.75 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. mt-Co2 ENSMUSG00000064354 2029.02 21082.08 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Rnr2 ENSMUSG00000064339 1961.91 20384.79 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. mt-Co1 ENSMUSG00000064351 1068.72 11104.30 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. Hbb-y ENSMUSG00000052187 1011.93 10514.23 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
10. mt-Nd2 ENSMUSG00000064345 1006.77 10460.62 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. Hba-a1 ENSMUSG00000069919 924.16 9602.28 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
12. Actb ENSMUSG00000029580 862.21 8958.60 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. H19 ENSMUSG00000000031 764.11 7939.31 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
14. mt-Nd3 ENSMUSG00000064360 727.97 7563.81 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
15. Mdk ENSMUSG00000027239 676.34 7027.36 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. Hba-x ENSMUSG00000055609 578.25 6008.18 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
17. mt-Co3 ENSMUSG00000064358 578.25 6008.18 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. mt-Nd5 ENSMUSG00000064367 542.11 5632.67 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
19. Eef1a1 ENSMUSG00000037742 413.03 4291.50 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
20. Hba-a2 ENSMUSG00000069917 340.75 3540.49 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
21. Gm13340 ENSMUSG00000083563 335.59 3486.87 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
22. Hbb-bh1 ENSMUSG00000052217 320.10 3325.93 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
23. Rpsa ENSMUSG00000032518 304.61 3164.98 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
24. Npm1 ENSMUSG00000057113 294.29 3057.75 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
25. Cfl1 ENSMUSG00000056201 283.96 2950.42 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
26. Pkm ENSMUSG00000032294 283.96 2950.42 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
27. Hsp90ab1 ENSMUSG00000023944 252.98 2628.53 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
28. Rpl4 ENSMUSG00000032399 252.98 2628.53 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
29. Tuba1b ENSMUSG00000023004 247.82 2574.92 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
30. mt-Rnr1 ENSMUSG00000064337 247.82 2574.92 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
31. Gm10800 ENSMUSG00000075014 242.66 2521.30 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
32. Igf2 ENSMUSG00000048583 232.33 2413.97 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
33. Rpl18a ENSMUSG00000045128 232.33 2413.97 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
34. Nedd4 ENSMUSG00000032216 227.17 2360.36 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
35. Tpt1 ENSMUSG00000060126 211.68 2199.41 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
36. Ubb ENSMUSG00000019505 201.35 2092.08 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
37. Fkbp1a ENSMUSG00000032966 196.19 2038.47 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
38. Hbb-bt ENSMUSG00000073940 185.86 1931.14 hemoglobin, beta adult t chain [Source:MGI Symbol;Acc:MGI:5474850]
39. Rpl23 ENSMUSG00000071415 185.86 1931.14 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
40. Rps20 ENSMUSG00000028234 185.86 1931.14 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
41. Eif5a ENSMUSG00000078812 180.70 1877.52 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
42. Hnrnpc ENSMUSG00000060373 180.70 1877.52 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
43. Afp ENSMUSG00000054932 175.54 1823.91 alpha fetoprotein [Source:MGI Symbol;Acc:MGI:87951]
44. Eif4g2 ENSMUSG00000005610 175.54 1823.91 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
45. Hmga2 ENSMUSG00000056758 170.38 1770.30 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
46. Hsp90aa1 ENSMUSG00000021270 170.38 1770.30 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
47. Lamp1 ENSMUSG00000031447 170.38 1770.30 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
48. Banf1 ENSMUSG00000024844 165.21 1716.58 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
49. Ago2 ENSMUSG00000036698 160.05 1662.96 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
50. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 160.05 1662.96 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
51. Tubb5 ENSMUSG00000001525 160.05 1662.96 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
52. Eef1b2 ENSMUSG00000025967 149.72 1555.63 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
53. Ldha ENSMUSG00000063229 149.72 1555.63 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
54. Hbb-bs ENSMUSG00000052305 144.56 1502.02 hemoglobin, beta adult s chain [Source:MGI Symbol;Acc:MGI:5474852]
55. Myl6 ENSMUSG00000090841 144.56 1502.02 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
56. Chchd2 ENSMUSG00000070493 139.40 1448.40 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
57. Set ENSMUSG00000054766 139.40 1448.40 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
58. Paics ENSMUSG00000029247 134.24 1394.79 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
59. Rps4x ENSMUSG00000031320 129.07 1341.07 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
60. Atp5g3 ENSMUSG00000018770 123.91 1287.46 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
61. Hdgf ENSMUSG00000004897 123.91 1287.46 hepatoma-derived growth factor [Source:MGI Symbol;Acc:MGI:1194494]
62. Ndufa12 ENSMUSG00000020022 123.91 1287.46 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
63. Rpl37 ENSMUSG00000041841 123.91 1287.46 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
64. Col3a1 ENSMUSG00000026043 118.75 1233.85 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
65. Pabpc1 ENSMUSG00000022283 118.75 1233.85 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
66. Rplp1 ENSMUSG00000007892 118.75 1233.85 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
67. Ybx1 ENSMUSG00000028639 118.75 1233.85 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
68. Gm5805 ENSMUSG00000061848 113.58 1180.13 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
69. Rpl32 ENSMUSG00000057841 113.58 1180.13 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
70. Tecr ENSMUSG00000031708 113.58 1180.13 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
71. Anp32b ENSMUSG00000028333 108.42 1126.51 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
72. Apoe ENSMUSG00000002985 108.42 1126.51 apolipoprotein E [Source:MGI Symbol;Acc:MGI:88057]
73. Cdkn1c ENSMUSG00000037664 108.42 1126.51 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
74. Grb10 ENSMUSG00000020176 108.42 1126.51 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
75. Rrm2 ENSMUSG00000020649 108.42 1126.51 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
76. Fth1 ENSMUSG00000024661 103.26 1072.90 ferritin heavy polypeptide 1 [Source:MGI Symbol;Acc:MGI:95588]
77. H3f3b ENSMUSG00000016559 103.26 1072.90 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
78. Igfbp4 ENSMUSG00000017493 103.26 1072.90 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
79. Ngfrap1 103.26 1072.90 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
80. Prdx1 ENSMUSG00000028691 103.26 1072.90 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
81. Rps5 ENSMUSG00000012848 103.26 1072.90 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
82. U2af2 ENSMUSG00000030435 103.26 1072.90 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
83. Wbp5 103.26 1072.90 WW domain binding protein 5
84. Ybx3 ENSMUSG00000030189 103.26 1072.90 Y box protein 3 [Source:MGI Symbol;Acc:MGI:2137670]
85. Arl6ip1 ENSMUSG00000030654 98.10 1019.29 ADP-ribosylation factor-like 6 interacting protein 1 [Source:MGI Symbol;Acc:MGI:1858943]
86. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 98.10 1019.29 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
87. Rpl41 ENSMUSG00000093674 98.10 1019.29 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
88. Rps26 ENSMUSG00000025362 98.10 1019.29 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
89. Ywhaz ENSMUSG00000022285 98.10 1019.29 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
90. Gm17132 ENSMUSG00000061331 92.93 965.57 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
91. Morf4l1 ENSMUSG00000062270 92.93 965.57 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
92. Psat1 ENSMUSG00000024640 87.77 911.95 phosphoserine aminotransferase 1 [Source:MGI Symbol;Acc:MGI:2183441]
93. Ran ENSMUSG00000029430 87.77 911.95 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
94. Son ENSMUSG00000022961 87.77 911.95 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
95. Sub1 ENSMUSG00000022205 87.77 911.95 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
96. Cd24a ENSMUSG00000047139 82.61 858.34 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
97. Eef2 ENSMUSG00000034994 82.61 858.34 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
98. Gm14303 ENSMUSG00000081344 82.61 858.34 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
99. Pcbp1 ENSMUSG00000051695 82.61 858.34 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
100. Tmsb4x ENSMUSG00000049775 82.61 858.34 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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