Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s77.

Sample reads: 96,255. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4745.35 49299.61 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3371.99 35031.73 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd4 ENSMUSG00000064363 2635.07 27375.84 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Nd1 ENSMUSG00000064341 2311.27 24011.87 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Rnr2 ENSMUSG00000064339 2221.94 23083.82 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
6. mt-Co2 ENSMUSG00000064354 2076.79 21575.85 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Atp6 ENSMUSG00000064357 1563.18 16239.93 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
8. mt-Co1 ENSMUSG00000064351 1083.06 11251.95 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd2 ENSMUSG00000064345 1071.89 11135.90 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Nd5 ENSMUSG00000064367 848.58 8815.93 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
11. mt-Nd3 ENSMUSG00000064360 815.08 8467.90 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. Actb ENSMUSG00000029580 725.76 7539.95 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. H19 ENSMUSG00000000031 703.43 7307.96 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
14. Mdk ENSMUSG00000027239 602.94 6263.97 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. mt-Co3 ENSMUSG00000064358 580.61 6031.98 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. Gm10800 ENSMUSG00000075014 569.44 5915.93 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
17. Hba-a1 ENSMUSG00000069919 524.78 5451.96 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
18. Eef1a1 ENSMUSG00000037742 457.79 4756.00 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
19. Hba-x ENSMUSG00000055609 446.62 4639.95 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
20. Igf2 ENSMUSG00000048583 424.29 4407.96 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
21. Hbb-y ENSMUSG00000052187 357.30 3712.00 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
22. Gm13340 ENSMUSG00000083563 334.97 3480.02 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
23. Rpsa ENSMUSG00000032518 301.47 3131.98 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
24. Cfl1 ENSMUSG00000056201 290.30 3015.94 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Npm1 ENSMUSG00000057113 290.30 3015.94 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
26. Hba-a2 ENSMUSG00000069917 267.97 2783.95 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
27. Nedd4 ENSMUSG00000032216 267.97 2783.95 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
28. Tuba1b ENSMUSG00000023004 256.81 2668.01 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
29. Tubb5 ENSMUSG00000001525 256.81 2668.01 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
30. Rpl4 ENSMUSG00000032399 223.31 2319.98 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
31. Rrm2 ENSMUSG00000020649 223.31 2319.98 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
32. Ubb ENSMUSG00000019505 223.31 2319.98 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
33. mt-Rnr1 ENSMUSG00000064337 223.31 2319.98 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
34. Eif5a ENSMUSG00000078812 212.15 2204.03 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
35. Rpl18a ENSMUSG00000045128 200.98 2087.99 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
36. Rps26 ENSMUSG00000025362 189.81 1971.94 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
37. Atp5g3 ENSMUSG00000018770 178.65 1856.00 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
38. Gm17132 ENSMUSG00000061331 178.65 1856.00 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
39. Hsp90ab1 ENSMUSG00000023944 178.65 1856.00 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
40. Myl6 ENSMUSG00000090841 178.65 1856.00 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
41. Pabpc1 ENSMUSG00000022283 178.65 1856.00 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
42. Pkm ENSMUSG00000032294 178.65 1856.00 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
43. Tpt1 ENSMUSG00000060126 178.65 1856.00 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
44. Trim28 ENSMUSG00000005566 178.65 1856.00 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
45. Afp ENSMUSG00000054932 167.48 1739.96 alpha fetoprotein [Source:MGI Symbol;Acc:MGI:87951]
46. Hbb-bt ENSMUSG00000073940 167.48 1739.96 hemoglobin, beta adult t chain [Source:MGI Symbol;Acc:MGI:5474850]
47. Hnrnpc ENSMUSG00000060373 167.48 1739.96 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
48. Eef1b2 ENSMUSG00000025967 156.32 1624.01 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
49. Rpl23 ENSMUSG00000071415 156.32 1624.01 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
50. Rps20 ENSMUSG00000028234 156.32 1624.01 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
51. Wbp5 156.32 1624.01 WW domain binding protein 5
52. Anp32b ENSMUSG00000028333 145.15 1507.97 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
53. Hsp90aa1 ENSMUSG00000021270 145.15 1507.97 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
54. Paics ENSMUSG00000029247 145.15 1507.97 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
55. H3f3b ENSMUSG00000016559 133.99 1392.03 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
56. Hmgn1 ENSMUSG00000040681 133.99 1392.03 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
57. Kpnb1 ENSMUSG00000001440 133.99 1392.03 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
58. Lamp1 ENSMUSG00000031447 133.99 1392.03 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
59. Prdx1 ENSMUSG00000028691 133.99 1392.03 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
60. Tecr ENSMUSG00000031708 133.99 1392.03 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
61. Banf1 ENSMUSG00000024844 122.82 1275.98 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
62. Cd24a ENSMUSG00000047139 122.82 1275.98 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
63. Eif4g2 ENSMUSG00000005610 122.82 1275.98 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
64. Ldha ENSMUSG00000063229 122.82 1275.98 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
65. Ago2 ENSMUSG00000036698 111.66 1160.04 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
66. Arl6ip1 ENSMUSG00000030654 111.66 1160.04 ADP-ribosylation factor-like 6 interacting protein 1 [Source:MGI Symbol;Acc:MGI:1858943]
67. C1qbp ENSMUSG00000018446 111.66 1160.04 complement component 1, q subcomponent binding protein [Source:MGI Symbol;Acc:MGI:1194505]
68. Fkbp1a ENSMUSG00000032966 111.66 1160.04 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
69. Grb10 ENSMUSG00000020176 111.66 1160.04 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
70. Hbb-bh1 ENSMUSG00000052217 111.66 1160.04 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
71. Rps4x ENSMUSG00000031320 111.66 1160.04 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
72. U2af2 ENSMUSG00000030435 111.66 1160.04 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
73. Ybx1 ENSMUSG00000028639 111.66 1160.04 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
74. Ywhaq ENSMUSG00000076432 111.66 1160.04 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta [Source:MGI Symbol;Acc:MGI:891963]
75. Apoe ENSMUSG00000002985 100.49 1043.99 apolipoprotein E [Source:MGI Symbol;Acc:MGI:88057]
76. Cdk4 ENSMUSG00000006728 100.49 1043.99 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
77. Cdkn1c ENSMUSG00000037664 100.49 1043.99 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
78. Chchd2 ENSMUSG00000070493 100.49 1043.99 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
79. Col3a1 ENSMUSG00000026043 100.49 1043.99 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
80. Dynll1 ENSMUSG00000009013 100.49 1043.99 dynein light chain LC8-type 1 [Source:MGI Symbol;Acc:MGI:1861457]
81. Hmga2 ENSMUSG00000056758 100.49 1043.99 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
82. Malat1 ENSMUSG00000092341 100.49 1043.99 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
83. Ywhaz ENSMUSG00000022285 100.49 1043.99 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
84. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 89.32 927.95 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
85. Arpc2 ENSMUSG00000006304 89.32 927.95 actin related protein 2/3 complex, subunit 2 [Source:MGI Symbol;Acc:MGI:1923959]
86. Atxn7l3b ENSMUSG00000074748 89.32 927.95 ataxin 7-like 3B [Source:MGI Symbol;Acc:MGI:1914971]
87. Calm1 ENSMUSG00000001175 89.32 927.95 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
88. Ddx5 ENSMUSG00000020719 89.32 927.95 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
89. Eif4b ENSMUSG00000058655 89.32 927.95 eukaryotic translation initiation factor 4B [Source:MGI Symbol;Acc:MGI:95304]
90. Eif4g1 ENSMUSG00000045983 89.32 927.95 eukaryotic translation initiation factor 4, gamma 1 [Source:MGI Symbol;Acc:MGI:2384784]
91. Elavl1 ENSMUSG00000040028 89.32 927.95 ELAV (embryonic lethal, abnormal vision)-like 1 (Hu antigen R) [Source:MGI Symbol;Acc:MGI:1100851]
92. Gm6274 ENSMUSG00000081281 89.32 927.95 predicted gene 6274 [Source:MGI Symbol;Acc:MGI:3645367]
93. Luc7l ENSMUSG00000024188 89.32 927.95 Luc7-like [Source:MGI Symbol;Acc:MGI:1914228]
94. Meg3 ENSMUSG00000021268 89.32 927.95 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
95. Ngfrap1 89.32 927.95 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
96. Pbx1 ENSMUSG00000052534 89.32 927.95 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
97. Pcbp1 ENSMUSG00000051695 89.32 927.95 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
98. Peg3 ENSMUSG00000002265 89.32 927.95 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
99. Ptp4a2 ENSMUSG00000028788 89.32 927.95 protein tyrosine phosphatase 4a2 [Source:MGI Symbol;Acc:MGI:1277117]
100. Set ENSMUSG00000054766 89.32 927.95 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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