Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s76.

Sample reads: 96,257. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3818.43 39669.28 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3811.44 39596.66 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd4 ENSMUSG00000064363 2366.69 24587.30 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Nd1 ENSMUSG00000064341 2160.15 22441.58 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Atp6 ENSMUSG00000064357 2149.18 22327.61 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. mt-Co2 ENSMUSG00000064354 1991.53 20689.80 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Rnr2 ENSMUSG00000064339 1670.25 17352.06 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. mt-Nd2 ENSMUSG00000064345 1190.33 12366.22 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 908.96 9443.09 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Nd3 ENSMUSG00000064360 849.09 8821.11 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. Mdk ENSMUSG00000027239 785.24 8157.78 midkine [Source:MGI Symbol;Acc:MGI:96949]
12. H19 ENSMUSG00000000031 777.26 8074.87 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. mt-Nd5 ENSMUSG00000064367 721.38 7494.34 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
14. mt-Co3 ENSMUSG00000064358 614.62 6385.22 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Gm10800 ENSMUSG00000075014 587.68 6105.35 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
16. Actb ENSMUSG00000029580 556.75 5784.02 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
17. Eef1a1 ENSMUSG00000037742 423.05 4395.02 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
18. Gm13340 ENSMUSG00000083563 375.16 3897.50 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Igf2 ENSMUSG00000048583 320.28 3327.36 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
20. Tuba1b ENSMUSG00000023004 319.28 3316.97 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
21. Npm1 ENSMUSG00000057113 286.36 2974.96 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Tubb5 ENSMUSG00000001525 271.39 2819.44 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
23. Pkm ENSMUSG00000032294 251.44 2612.18 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
24. Hmga2 ENSMUSG00000056758 236.47 2456.66 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
25. Rpsa ENSMUSG00000032518 226.49 2352.98 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
26. Nedd4 ENSMUSG00000032216 225.49 2342.59 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Rpl4 ENSMUSG00000032399 219.51 2280.47 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
28. Ubb ENSMUSG00000019505 219.51 2280.47 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
29. Cfl1 ENSMUSG00000056201 209.53 2176.79 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
30. Hsp90ab1 ENSMUSG00000023944 202.55 2104.27 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
31. Eif5a ENSMUSG00000078812 190.57 1979.81 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
32. Rpl23 ENSMUSG00000071415 186.58 1938.36 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
33. Banf1 ENSMUSG00000024844 179.60 1865.85 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
34. Tpt1 ENSMUSG00000060126 177.60 1845.07 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
35. Chchd2 ENSMUSG00000070493 174.61 1814.01 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
36. Eif4g2 ENSMUSG00000005610 171.61 1782.84 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
37. Gm17132 ENSMUSG00000061331 169.62 1762.16 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
38. Hba-a1 ENSMUSG00000069919 167.62 1741.39 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
39. Paics ENSMUSG00000029247 161.64 1679.26 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
40. Myl6 ENSMUSG00000090841 158.64 1648.09 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
41. Ndufa12 ENSMUSG00000020022 158.64 1648.09 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
42. Hsp90aa1 ENSMUSG00000021270 153.66 1596.36 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
43. mt-Rnr1 ENSMUSG00000064337 150.66 1565.19 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
44. Hnrnpc ENSMUSG00000060373 149.66 1554.80 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
45. Grb10 ENSMUSG00000020176 148.67 1544.52 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
46. Atp5g3 ENSMUSG00000018770 143.68 1492.68 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
47. Hbb-y ENSMUSG00000052187 143.68 1492.68 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
48. Ybx1 ENSMUSG00000028639 141.68 1471.90 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
49. Eef1b2 ENSMUSG00000025967 135.70 1409.77 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
50. Rps20 ENSMUSG00000028234 134.70 1399.38 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
51. Lamp1 ENSMUSG00000031447 132.70 1378.61 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
52. Rpl18a ENSMUSG00000045128 130.71 1357.93 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
53. Peg3 ENSMUSG00000002265 125.72 1306.09 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
54. Set ENSMUSG00000054766 125.72 1306.09 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
55. Afp ENSMUSG00000054932 121.73 1264.64 alpha fetoprotein [Source:MGI Symbol;Acc:MGI:87951]
56. Fkbp1a ENSMUSG00000032966 121.73 1264.64 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
57. Ttr ENSMUSG00000061808 118.73 1233.47 transthyretin [Source:MGI Symbol;Acc:MGI:98865]
58. Rps4x ENSMUSG00000031320 115.74 1202.41 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
59. Cox8a ENSMUSG00000035885 111.75 1160.96 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
60. Rps26 ENSMUSG00000025362 111.75 1160.96 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
61. Ywhab ENSMUSG00000018326 110.75 1150.57 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
62. Cdkn1c ENSMUSG00000037664 109.75 1140.18 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
63. Pabpc1 ENSMUSG00000022283 109.75 1140.18 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
64. U2af2 ENSMUSG00000030435 107.76 1119.51 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
65. Wbp5 106.76 1109.12 WW domain binding protein 5
66. Trim28 ENSMUSG00000005566 103.77 1078.06 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
67. Ago2 ENSMUSG00000036698 101.77 1057.28 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
68. Rplp1 ENSMUSG00000007892 101.77 1057.28 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
69. Cdk4 ENSMUSG00000006728 99.78 1036.60 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
70. Rps5 ENSMUSG00000012848 99.78 1036.60 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
71. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 97.78 1015.83 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
72. Anp32b ENSMUSG00000028333 97.78 1015.83 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
73. Pcbp1 ENSMUSG00000051695 97.78 1015.83 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
74. Prdx1 ENSMUSG00000028691 97.78 1015.83 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
75. Arpc2 ENSMUSG00000006304 96.78 1005.44 actin related protein 2/3 complex, subunit 2 [Source:MGI Symbol;Acc:MGI:1923959]
76. Malat1 ENSMUSG00000092341 95.78 995.05 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
77. Ngfrap1 95.78 995.05 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
78. Ran ENSMUSG00000029430 95.78 995.05 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
79. Nepn ENSMUSG00000038624 93.79 974.37 nephrocan [Source:MGI Symbol;Acc:MGI:1913900]
80. Hmgn1 ENSMUSG00000040681 92.79 963.99 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
81. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 92.79 963.99 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
82. Hba-x ENSMUSG00000055609 90.80 943.31 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
83. Cd24a ENSMUSG00000047139 89.80 932.92 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
84. Ddx5 ENSMUSG00000020719 88.80 922.53 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
85. Meg3 ENSMUSG00000021268 88.80 922.53 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
86. Tecr ENSMUSG00000031708 88.80 922.53 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
87. Ywhae ENSMUSG00000020849 87.80 912.15 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
88. Ldha ENSMUSG00000063229 86.81 901.86 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
89. Gm14303 ENSMUSG00000081344 84.81 881.08 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
90. H3f3b ENSMUSG00000016559 83.81 870.69 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
91. Tpm4 ENSMUSG00000031799 83.81 870.69 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
92. Gm5805 ENSMUSG00000061848 81.82 850.02 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
93. Rps3a1 ENSMUSG00000028081 80.82 839.63 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
94. Ywhag ENSMUSG00000051391 79.82 829.24 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide [Source:MGI Symbol;Acc:MGI:108109]
95. Hspe1 ENSMUSG00000073676 78.82 818.85 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
96. Cdk1 ENSMUSG00000019942 77.83 808.57 cyclin-dependent kinase 1 [Source:MGI Symbol;Acc:MGI:88351]
97. Rpl32 ENSMUSG00000057841 77.83 808.57 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
98. Rpl41 ENSMUSG00000093674 77.83 808.57 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
99. Sub1 ENSMUSG00000022205 77.83 808.57 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
100. Eef2 ENSMUSG00000034994 76.83 798.18 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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