Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s74.

Sample reads: 96,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4291.76 44595.73 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 4222.12 43872.10 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Nd4 ENSMUSG00000064363 2484.52 25816.68 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Co2 ENSMUSG00000064354 2421.84 25165.37 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd1 ENSMUSG00000064341 2353.94 24459.82 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Atp6 ENSMUSG00000064357 2211.17 22976.30 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Rnr2 ENSMUSG00000064339 2077.11 21583.28 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. mt-Nd2 ENSMUSG00000064345 1136.93 11813.85 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 1030.72 10710.22 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Nd3 ENSMUSG00000064360 1002.86 10420.73 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. Mdk ENSMUSG00000027239 781.75 8123.17 midkine [Source:MGI Symbol;Acc:MGI:96949]
12. H19 ENSMUSG00000000031 762.59 7924.08 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. mt-Co3 ENSMUSG00000064358 689.47 7164.29 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
14. Eef1a1 ENSMUSG00000037742 517.10 5373.19 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. mt-Nd5 ENSMUSG00000064367 482.28 5011.38 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
16. Actb ENSMUSG00000029580 470.09 4884.71 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
17. Gm13340 ENSMUSG00000083563 391.74 4070.58 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Rpsa ENSMUSG00000032518 351.70 3654.52 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
19. mt-Rnr1 ENSMUSG00000064337 348.22 3618.36 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
20. Gm10800 ENSMUSG00000075014 336.03 3491.69 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
21. Npm1 ENSMUSG00000057113 285.54 2967.05 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Tuba1b ENSMUSG00000023004 285.54 2967.05 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
23. Pkm ENSMUSG00000032294 280.31 2912.70 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
24. Tubb5 ENSMUSG00000001525 264.64 2749.88 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
25. Igf2 ENSMUSG00000048583 261.16 2713.72 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
26. Grb10 ENSMUSG00000020176 229.82 2388.06 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
27. Nedd4 ENSMUSG00000032216 222.86 2315.74 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
28. Hmga2 ENSMUSG00000056758 221.12 2297.66 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
29. Ubb ENSMUSG00000019505 188.04 1953.93 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
30. Cfl1 ENSMUSG00000056201 182.81 1899.58 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
31. Hba-a1 ENSMUSG00000069919 181.07 1881.50 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
32. Rpl23 ENSMUSG00000071415 181.07 1881.50 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
33. Eif5a ENSMUSG00000078812 179.33 1863.42 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
34. Hsp90ab1 ENSMUSG00000023944 175.85 1827.26 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
35. Rpl18a ENSMUSG00000045128 174.11 1809.18 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
36. Paics ENSMUSG00000029247 172.37 1791.10 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
37. Banf1 ENSMUSG00000024844 167.14 1736.75 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
38. Tpt1 ENSMUSG00000060126 160.18 1664.43 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
39. Myl6 ENSMUSG00000090841 158.44 1646.35 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
40. Hsp90aa1 ENSMUSG00000021270 153.22 1592.11 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
41. Chchd2 ENSMUSG00000070493 151.47 1573.93 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
42. Lamp1 ENSMUSG00000031447 151.47 1573.93 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
43. Rpl4 ENSMUSG00000032399 151.47 1573.93 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
44. Eif4g2 ENSMUSG00000005610 149.73 1555.85 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
45. Hbb-y ENSMUSG00000052187 149.73 1555.85 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
46. Ngfrap1 149.73 1555.85 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
47. Atp5g3 ENSMUSG00000018770 144.51 1501.61 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
48. U2af2 ENSMUSG00000030435 144.51 1501.61 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
49. Ndufa12 ENSMUSG00000020022 137.55 1429.28 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
50. Ybx1 ENSMUSG00000028639 137.55 1429.28 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
51. Ago2 ENSMUSG00000036698 134.06 1393.02 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
52. Rps20 ENSMUSG00000028234 134.06 1393.02 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
53. Pabpc1 ENSMUSG00000022283 130.58 1356.86 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
54. Rps4x ENSMUSG00000031320 128.84 1338.78 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
55. Hnrnpc ENSMUSG00000060373 127.10 1320.70 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
56. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 127.10 1320.70 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
57. Fkbp1a ENSMUSG00000032966 125.36 1302.62 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
58. Rplp1 ENSMUSG00000007892 125.36 1302.62 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
59. Set ENSMUSG00000054766 123.62 1284.54 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
60. Ywhab ENSMUSG00000018326 120.13 1248.27 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
61. Afp ENSMUSG00000054932 111.43 1157.87 alpha fetoprotein [Source:MGI Symbol;Acc:MGI:87951]
62. Eef1b2 ENSMUSG00000025967 111.43 1157.87 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
63. Rrm2 ENSMUSG00000020649 109.69 1139.79 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
64. Col3a1 ENSMUSG00000026043 107.95 1121.71 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
65. Rps26 ENSMUSG00000025362 107.95 1121.71 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
66. Cdk4 ENSMUSG00000006728 106.21 1103.63 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
67. Cdkn1c ENSMUSG00000037664 104.46 1085.45 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
68. Hmgn1 ENSMUSG00000040681 102.72 1067.36 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
69. Anp32b ENSMUSG00000028333 97.50 1013.12 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
70. Wbp5 97.50 1013.12 WW domain binding protein 5
71. Peg3 ENSMUSG00000002265 95.76 995.04 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
72. Gm5805 ENSMUSG00000061848 94.02 976.96 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
73. Rps5 ENSMUSG00000012848 94.02 976.96 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
74. Trim28 ENSMUSG00000005566 92.28 958.88 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
75. Pcbp1 ENSMUSG00000051695 90.54 940.80 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
76. Hba-x ENSMUSG00000055609 88.80 922.72 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
77. Rpl32 ENSMUSG00000057841 88.80 922.72 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
78. Aldoa ENSMUSG00000030695, ENSMUSG00000114515 87.05 904.54 aldolase A, fructose-bisphosphate [Source:MGI Symbol;Acc:MGI:87994]
79. Ddx5 ENSMUSG00000020719 87.05 904.54 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
80. Tecr ENSMUSG00000031708 87.05 904.54 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
81. Cox8a ENSMUSG00000035885 85.31 886.46 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
82. Gm14303 ENSMUSG00000081344 85.31 886.46 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
83. Rps3a1 ENSMUSG00000028081 85.31 886.46 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
84. Stmn1 ENSMUSG00000028832 85.31 886.46 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
85. Eef2 ENSMUSG00000034994 83.57 868.38 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
86. Hnrnpa2b1 ENSMUSG00000004980 83.57 868.38 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
87. Rpl8 ENSMUSG00000003970 83.57 868.38 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
88. Rpl37 ENSMUSG00000041841 81.83 850.30 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
89. Cd24a ENSMUSG00000047139 80.09 832.22 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
90. Fkbp4 ENSMUSG00000030357 80.09 832.22 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
91. Arl6ip1 ENSMUSG00000030654 78.35 814.14 ADP-ribosylation factor-like 6 interacting protein 1 [Source:MGI Symbol;Acc:MGI:1858943]
92. Ccnd2 ENSMUSG00000000184 78.35 814.14 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
93. Ldha ENSMUSG00000063229 78.35 814.14 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
94. Hbb-bh1 ENSMUSG00000052217 76.61 796.06 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
95. Sub1 ENSMUSG00000022205 76.61 796.06 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
96. Ywhae ENSMUSG00000020849 76.61 796.06 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
97. Caprin1 ENSMUSG00000027184 74.87 777.98 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
98. Hnrnpa0 ENSMUSG00000007836 74.87 777.98 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
99. Igfbp4 ENSMUSG00000017493 74.87 777.98 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
100. Morf4l2 ENSMUSG00000031422 74.87 777.98 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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