Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s73.

Sample reads: 96,252. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3816.17 39647.61 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3414.27 35472.12 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2621.59 27236.67 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 2324.34 24148.43 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Co2 ENSMUSG00000064354 1664.08 17288.75 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 1619.63 16826.94 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. Mdk ENSMUSG00000027239 1123.27 11670.07 midkine [Source:MGI Symbol;Acc:MGI:96949]
8. mt-Rnr2 ENSMUSG00000064339 1114.94 11583.53 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. mt-Nd2 ENSMUSG00000064345 1053.82 10948.53 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. H19 ENSMUSG00000000031 974.18 10121.12 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. mt-Co1 ENSMUSG00000064351 940.85 9774.84 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
12. mt-Co3 ENSMUSG00000064358 763.97 7937.17 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. mt-Nd3 ENSMUSG00000064360 701.93 7292.61 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Actb ENSMUSG00000029580 549.14 5705.22 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. mt-Nd5 ENSMUSG00000064367 471.35 4897.03 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
16. Gm13340 ENSMUSG00000083563 467.65 4858.59 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
17. Eef1a1 ENSMUSG00000037742 418.57 4348.68 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
18. Gm10800 ENSMUSG00000075014 417.64 4339.02 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
19. Hbb-y ENSMUSG00000052187 375.97 3906.09 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
20. Rpl18a ENSMUSG00000045128 344.48 3578.93 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
21. Pkm ENSMUSG00000032294 339.85 3530.83 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
22. Tuba1b ENSMUSG00000023004 328.74 3415.40 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
23. Npm1 ENSMUSG00000057113 303.74 3155.67 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Cfl1 ENSMUSG00000056201 285.22 2963.26 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Tubb5 ENSMUSG00000001525 284.29 2953.59 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Hba-a1 ENSMUSG00000069919 273.18 2838.17 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
27. Igf2 ENSMUSG00000048583 269.47 2799.62 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
28. Hba-x ENSMUSG00000055609 254.66 2645.76 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
29. Rpl4 ENSMUSG00000032399 247.25 2568.77 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
30. Ubb ENSMUSG00000019505 245.40 2549.55 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Hmga2 ENSMUSG00000056758 242.62 2520.67 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
32. Rpsa ENSMUSG00000032518 209.28 2174.29 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
33. Nedd4 ENSMUSG00000032216 208.36 2164.73 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
34. Paics ENSMUSG00000029247 207.43 2155.07 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
35. Banf1 ENSMUSG00000024844 197.24 2049.20 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
36. Tpt1 ENSMUSG00000060126 196.32 2039.64 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
37. mt-Rnr1 ENSMUSG00000064337 189.84 1972.32 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
38. Grb10 ENSMUSG00000020176 182.43 1895.33 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
39. Hsp90ab1 ENSMUSG00000023944 179.65 1866.45 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
40. Hsp90aa1 ENSMUSG00000021270 173.17 1799.13 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
41. Ndufa12 ENSMUSG00000020022 170.39 1770.25 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
42. Eef1b2 ENSMUSG00000025967 160.20 1664.38 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
43. Eif4g2 ENSMUSG00000005610 160.20 1664.38 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
44. Fkbp1a ENSMUSG00000032966 159.28 1654.82 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
45. Rpl23 ENSMUSG00000071415 156.50 1625.94 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
46. Myl6 ENSMUSG00000090841 153.72 1597.05 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
47. Hnrnpc ENSMUSG00000060373 148.16 1539.29 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
48. Rps20 ENSMUSG00000028234 138.90 1443.08 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
49. Ngfrap1 137.98 1433.53 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
50. Hbb-bh1 ENSMUSG00000052217 130.57 1356.54 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
51. Col3a1 ENSMUSG00000026043 125.01 1298.78 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
52. Chchd2 ENSMUSG00000070493 124.09 1289.22 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
53. Rrm2 ENSMUSG00000020649 124.09 1289.22 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
54. Cdkn1c ENSMUSG00000037664 123.16 1279.56 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
55. Trim28 ENSMUSG00000005566 122.24 1270.00 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
56. Tecr ENSMUSG00000031708 121.31 1260.33 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
57. Cdk4 ENSMUSG00000006728 119.46 1241.11 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
58. Rplp1 ENSMUSG00000007892 117.61 1221.89 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
59. Ddx39b ENSMUSG00000019432 112.98 1173.79 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
60. Rps26 ENSMUSG00000025362 112.05 1164.13 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
61. Hnrnpa0 ENSMUSG00000007836 111.12 1154.47 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
62. Kpnb1 ENSMUSG00000001440 111.12 1154.47 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
63. Jund ENSMUSG00000071076, ENSMUSG00000110974 110.20 1144.91 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
64. Ywhab ENSMUSG00000018326 110.20 1144.91 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
65. Atp5g3 ENSMUSG00000018770 108.35 1125.69 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
66. Top2a ENSMUSG00000020914 106.49 1106.36 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
67. U2af2 ENSMUSG00000030435 106.49 1106.36 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
68. Hnrnpa2b1 ENSMUSG00000004980 105.57 1096.81 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
69. Lamp1 ENSMUSG00000031447 105.57 1096.81 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
70. Plagl1 ENSMUSG00000019817 101.86 1058.26 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
71. Rpl32 ENSMUSG00000057841 101.86 1058.26 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
72. Rps4x ENSMUSG00000031320 101.86 1058.26 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
73. Eef2 ENSMUSG00000034994 100.01 1039.04 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
74. Pabpc1 ENSMUSG00000022283 100.01 1039.04 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
75. Sfrp1 ENSMUSG00000031548 98.16 1019.82 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
76. Gm9844 ENSMUSG00000091955 95.38 990.94 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
77. Hba-a2 ENSMUSG00000069917 95.38 990.94 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
78. Hspe1 ENSMUSG00000073676 95.38 990.94 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
79. Cdk1 ENSMUSG00000019942 94.46 981.38 cyclin-dependent kinase 1 [Source:MGI Symbol;Acc:MGI:88351]
80. Cox8a ENSMUSG00000035885 94.46 981.38 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
81. Anp32b ENSMUSG00000028333 93.53 971.72 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
82. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 93.53 971.72 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
83. Srsf3 ENSMUSG00000071172 93.53 971.72 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
84. Gm14303 ENSMUSG00000081344 91.68 952.50 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
85. Gm17132 ENSMUSG00000061331 91.68 952.50 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
86. Rpl39-ps ENSMUSG00000036305 91.68 952.50 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
87. Scd2 ENSMUSG00000025203 91.68 952.50 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
88. Fkbp4 ENSMUSG00000030357 88.90 923.62 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
89. Tmsb10 ENSMUSG00000079523 88.90 923.62 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
90. Igfbp4 ENSMUSG00000017493 87.97 913.95 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
91. Peg3 ENSMUSG00000002265 86.12 894.73 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
92. Rps5 ENSMUSG00000012848 86.12 894.73 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
93. Eif5a ENSMUSG00000078812 85.19 885.07 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
94. Ran ENSMUSG00000029430 85.19 885.07 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
95. Tmpo ENSMUSG00000019961 85.19 885.07 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
96. Sub1 ENSMUSG00000022205 84.27 875.51 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
97. Cdc42 ENSMUSG00000006699 83.34 865.85 cell division cycle 42 [Source:MGI Symbol;Acc:MGI:106211]
98. Ywhae ENSMUSG00000020849 83.34 865.85 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
99. Rpl41 ENSMUSG00000093674 81.49 846.63 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
100. Dlk1 ENSMUSG00000040856, ENSMUSG00000098411 78.71 817.75 delta like non-canonical Notch ligand 1 [Source:MGI Symbol;Acc:MGI:94900]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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