Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s72.

Sample reads: 96,258. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3636.70 37781.07 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3241.25 33672.81 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd4 ENSMUSG00000064363 2586.55 26871.24 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Rnr2 ENSMUSG00000064339 2270.79 23590.86 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
5. mt-Nd1 ENSMUSG00000064341 2088.20 21693.96 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Atp6 ENSMUSG00000064357 2045.83 21253.79 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Co2 ENSMUSG00000064354 2000.44 20782.24 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. Gm10800 ENSMUSG00000075014 1375.99 14294.93 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
9. mt-Nd2 ENSMUSG00000064345 1183.31 12293.21 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Nd5 ENSMUSG00000064367 1066.29 11077.51 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
11. mt-Co1 ENSMUSG00000064351 986.60 10249.62 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
12. H19 ENSMUSG00000000031 893.79 9285.44 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. mt-Nd3 ENSMUSG00000064360 767.69 7975.40 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. mt-Co3 ENSMUSG00000064358 597.21 6204.32 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Actb ENSMUSG00000029580 576.02 5984.18 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
16. Mdk ENSMUSG00000027239 555.84 5774.53 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. Eef1a1 ENSMUSG00000037742 420.67 4370.27 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
18. Gm13340 ENSMUSG00000083563 372.24 3867.14 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Igf2 ENSMUSG00000048583 370.23 3846.26 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
20. Gm17132 ENSMUSG00000061331 366.19 3804.29 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
21. Hmga2 ENSMUSG00000056758 351.06 3647.10 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
22. Hbb-y ENSMUSG00000052187 337.95 3510.91 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
23. Npm1 ENSMUSG00000057113 286.50 2976.40 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Pkm ENSMUSG00000032294 275.40 2861.08 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
25. Rpsa ENSMUSG00000032518 255.22 2651.44 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
26. Tubb5 ENSMUSG00000001525 244.13 2536.23 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
27. Nedd4 ENSMUSG00000032216 235.05 2441.90 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
28. Tuba1b ENSMUSG00000023004 217.90 2263.73 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
29. mt-Rnr1 ENSMUSG00000064337 215.88 2242.74 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
30. Hba-a1 ENSMUSG00000069919 209.83 2179.89 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
31. Cfl1 ENSMUSG00000056201 205.79 2137.92 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
32. Hsp90ab1 ENSMUSG00000023944 199.74 2075.07 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
33. Set ENSMUSG00000054766 194.70 2022.71 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
34. Rpl4 ENSMUSG00000032399 177.55 1844.54 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
35. Gm21897 ENSMUSG00000094472 172.50 1792.07 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
36. Grb10 ENSMUSG00000020176 172.50 1792.07 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
37. Tpt1 ENSMUSG00000060126 170.49 1771.19 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
38. Hba-x ENSMUSG00000055609 168.47 1750.21 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
39. Rrm2 ENSMUSG00000020649 167.46 1739.71 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
40. U2af2 ENSMUSG00000030435 164.43 1708.24 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
41. Ubb ENSMUSG00000019505 162.42 1687.35 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
42. Ybx1 ENSMUSG00000028639 159.39 1655.88 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
43. Banf1 ENSMUSG00000024844 153.34 1593.02 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
44. Hbb-bh1 ENSMUSG00000052217 151.32 1572.04 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
45. Hsp90aa1 ENSMUSG00000021270 148.29 1540.56 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
46. Eif5a ENSMUSG00000078812 146.27 1519.57 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
47. Hnrnpc ENSMUSG00000060373 146.27 1519.57 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
48. Atp5g3 ENSMUSG00000018770 143.25 1488.20 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
49. Col3a1 ENSMUSG00000026043 143.25 1488.20 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
50. Eif4g2 ENSMUSG00000005610 140.22 1456.72 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
51. Gm13936 ENSMUSG00000085444 138.20 1435.74 predicted gene 13936 [Source:MGI Symbol;Acc:MGI:3651878]
52. Gm26905 ENSMUSG00000097695 138.20 1435.74 predicted gene, 26905 [Source:MGI Symbol;Acc:MGI:5477399]
53. Paics ENSMUSG00000029247 136.19 1414.86 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
54. Chchd2 ENSMUSG00000070493 135.18 1404.36 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
55. Rpl23 ENSMUSG00000071415 132.15 1372.88 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
56. Ago2 ENSMUSG00000036698 130.13 1351.90 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
57. Lamp1 ENSMUSG00000031447 129.13 1341.51 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
58. Myl6 ENSMUSG00000090841 128.12 1331.02 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
59. Rpl18a ENSMUSG00000045128 127.11 1320.52 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
60. Fkbp1a ENSMUSG00000032966 126.10 1310.03 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
61. Peg3 ENSMUSG00000002265 125.09 1299.54 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
62. Rps20 ENSMUSG00000028234 125.09 1299.54 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
63. Ywhab ENSMUSG00000018326 124.08 1289.05 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
64. Eef1b2 ENSMUSG00000025967 117.02 1215.70 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
65. Pabpc1 ENSMUSG00000022283 115.00 1194.72 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
66. Ndufa12 ENSMUSG00000020022 112.98 1173.73 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
67. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 110.97 1152.85 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
68. Sfrp1 ENSMUSG00000031548 109.96 1142.36 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
69. Cdk4 ENSMUSG00000006728 108.95 1131.86 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
70. Ran ENSMUSG00000029430 108.95 1131.86 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
71. Rps26 ENSMUSG00000025362 108.95 1131.86 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
72. Ngfrap1 106.93 1110.88 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
73. Pcbp1 ENSMUSG00000051695 105.92 1100.39 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
74. Malat1 ENSMUSG00000092341 103.91 1079.50 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
75. Rps5 ENSMUSG00000012848 99.87 1037.53 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
76. Wbp5 99.87 1037.53 WW domain binding protein 5
77. Trim28 ENSMUSG00000005566 96.84 1006.05 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
78. Hba-a2 ENSMUSG00000069917 94.83 985.17 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
79. Stmn1 ENSMUSG00000028832 93.82 974.68 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
80. Anp32b ENSMUSG00000028333 92.81 964.19 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
81. Gm5805 ENSMUSG00000061848 91.80 953.69 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
82. Rps4x ENSMUSG00000031320 91.80 953.69 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
83. Plagl1 ENSMUSG00000019817 88.77 922.22 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
84. Rpl41 ENSMUSG00000093674 87.76 911.72 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
85. Sub1 ENSMUSG00000022205 87.76 911.72 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
86. Eef2 ENSMUSG00000034994 85.75 890.84 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
87. Tecr ENSMUSG00000031708 85.75 890.84 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
88. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 83.73 869.86 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
89. Cdkn1c ENSMUSG00000037664 81.71 848.87 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
90. Ddx39b ENSMUSG00000019432 81.71 848.87 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
91. Hnrnpa0 ENSMUSG00000007836 81.71 848.87 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
92. Hmgn1 ENSMUSG00000040681 80.70 838.38 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
93. Cox8a ENSMUSG00000035885 79.69 827.89 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
94. Acta2 ENSMUSG00000035783 78.69 817.50 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
95. Rplp1 ENSMUSG00000007892 78.69 817.50 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
96. Caprin1 ENSMUSG00000027184 76.67 796.51 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
97. Ccnd2 ENSMUSG00000000184 76.67 796.51 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
98. Col1a1 ENSMUSG00000001506 76.67 796.51 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
99. Hspe1 ENSMUSG00000073676 76.67 796.51 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
100. Srsf3 ENSMUSG00000071172 76.67 796.51 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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