Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s71.

Sample reads: 96,257. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4190.36 43533.19 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Nd1 ENSMUSG00000064341 3763.11 39094.53 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
3. mt-Rnr2 ENSMUSG00000064339 3691.90 38354.74 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
4. mt-Cytb ENSMUSG00000064370 3582.35 37216.64 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
5. mt-Nd4 ENSMUSG00000064363 2464.92 25607.78 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Atp6 ENSMUSG00000064357 1911.68 19860.23 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Co2 ENSMUSG00000064354 1884.29 19575.68 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Nd5 ENSMUSG00000064367 1385.83 14397.23 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
9. mt-Nd2 ENSMUSG00000064345 1276.28 13259.13 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. H19 ENSMUSG00000000031 1013.36 10527.68 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. Mdk ENSMUSG00000027239 969.54 10072.44 midkine [Source:MGI Symbol;Acc:MGI:96949]
12. mt-Co1 ENSMUSG00000064351 876.42 9105.03 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
13. Actb ENSMUSG00000029580 859.98 8934.24 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Gm10800 ENSMUSG00000075014 755.91 7853.07 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
15. mt-Nd3 ENSMUSG00000064360 755.91 7853.07 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
16. mt-Co3 ENSMUSG00000064358 476.55 4950.83 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
17. Hmga2 ENSMUSG00000056758 410.82 4267.96 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
18. Eef1a1 ENSMUSG00000037742 350.57 3642.03 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
19. mt-Rnr1 ENSMUSG00000064337 350.57 3642.03 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
20. Gm13340 ENSMUSG00000083563 328.66 3414.41 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. Igf2 ENSMUSG00000048583 312.22 3243.62 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
22. Npm1 ENSMUSG00000057113 312.22 3243.62 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Tuba1b ENSMUSG00000023004 301.27 3129.86 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Rpsa ENSMUSG00000032518 257.45 2674.62 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
25. Hbb-y ENSMUSG00000052187 241.01 2503.83 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
26. Tubb5 ENSMUSG00000001525 241.01 2503.83 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
27. Ubb ENSMUSG00000019505 241.01 2503.83 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
28. Pkm ENSMUSG00000032294 224.58 2333.14 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
29. Banf1 ENSMUSG00000024844 208.15 2162.45 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
30. Rpl18a ENSMUSG00000045128 208.15 2162.45 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
31. Nedd4 ENSMUSG00000032216 202.67 2105.52 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
32. Cfl1 ENSMUSG00000056201 197.19 2048.59 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
33. Hsp90ab1 ENSMUSG00000023944 197.19 2048.59 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
34. Chchd2 ENSMUSG00000070493 186.24 1934.83 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
35. Set ENSMUSG00000054766 180.76 1877.90 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
36. Malat1 ENSMUSG00000092341 175.28 1820.96 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
37. Ago2 ENSMUSG00000036698 164.33 1707.21 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
38. Hsp90aa1 ENSMUSG00000021270 158.85 1650.28 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
39. Myl6 ENSMUSG00000090841 158.85 1650.28 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
40. Meg3 ENSMUSG00000021268 153.37 1593.34 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
41. Rpl23 ENSMUSG00000071415 142.42 1479.59 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
42. Serbp1 ENSMUSG00000036371 142.42 1479.59 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
43. Hnrnpa2b1 ENSMUSG00000004980 131.46 1365.72 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
44. Rpl4 ENSMUSG00000032399 131.46 1365.72 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
45. Rps20 ENSMUSG00000028234 131.46 1365.72 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
46. Rrm2 ENSMUSG00000020649 131.46 1365.72 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
47. Cdk4 ENSMUSG00000006728 125.98 1308.79 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
48. Eif5a ENSMUSG00000078812 125.98 1308.79 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
49. Fkbp1a ENSMUSG00000032966 125.98 1308.79 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
50. Grb10 ENSMUSG00000020176 125.98 1308.79 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
51. Hnrnpc ENSMUSG00000060373 120.51 1251.97 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
52. Tpt1 ENSMUSG00000060126 120.51 1251.97 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
53. Ywhab ENSMUSG00000018326 120.51 1251.97 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
54. Col1a1 ENSMUSG00000001506 115.03 1195.03 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
55. Eef1b2 ENSMUSG00000025967 115.03 1195.03 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
56. Eif4g2 ENSMUSG00000005610 115.03 1195.03 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
57. Hba-a1 ENSMUSG00000069919 115.03 1195.03 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
58. Ngfrap1 115.03 1195.03 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
59. Tecr ENSMUSG00000031708 115.03 1195.03 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
60. Ybx1 ENSMUSG00000028639 115.03 1195.03 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
61. Gm5805 ENSMUSG00000061848 109.55 1138.10 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
62. Hmgn1 ENSMUSG00000040681 109.55 1138.10 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
63. Paics ENSMUSG00000029247 109.55 1138.10 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
64. U2af2 ENSMUSG00000030435 109.55 1138.10 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
65. Ddx5 ENSMUSG00000020719 104.07 1081.17 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
66. Peg3 ENSMUSG00000002265 104.07 1081.17 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
67. Ran ENSMUSG00000029430 104.07 1081.17 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
68. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 104.07 1081.17 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
69. Sub1 ENSMUSG00000022205 104.07 1081.17 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
70. Anp32b ENSMUSG00000028333 98.60 1024.34 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
71. Cox8a ENSMUSG00000035885 98.60 1024.34 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
72. Ndufa12 ENSMUSG00000020022 98.60 1024.34 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
73. Sf3b1 ENSMUSG00000025982 98.60 1024.34 splicing factor 3b, subunit 1 [Source:MGI Symbol;Acc:MGI:1932339]
74. 2810417H13Rik 93.12 967.41 RIKEN cDNA 2810417H13 gene
75. Cd24a ENSMUSG00000047139 93.12 967.41 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
76. Col3a1 ENSMUSG00000026043 93.12 967.41 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
77. Fubp1 ENSMUSG00000028034 93.12 967.41 far upstream element (FUSE) binding protein 1 [Source:MGI Symbol;Acc:MGI:1196294]
78. Arl6ip1 ENSMUSG00000030654 87.64 910.48 ADP-ribosylation factor-like 6 interacting protein 1 [Source:MGI Symbol;Acc:MGI:1858943]
79. Atp5g3 ENSMUSG00000018770 87.64 910.48 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
80. Calm1 ENSMUSG00000001175 87.64 910.48 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
81. Ccnd2 ENSMUSG00000000184 87.64 910.48 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
82. Igfbp4 ENSMUSG00000017493 87.64 910.48 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
83. Lamp1 ENSMUSG00000031447 87.64 910.48 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
84. Ssbp3 ENSMUSG00000061887 87.64 910.48 single-stranded DNA binding protein 3 [Source:MGI Symbol;Acc:MGI:1919725]
85. Stmn1 ENSMUSG00000028832 87.64 910.48 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
86. Ywhaz ENSMUSG00000022285 87.64 910.48 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
87. Hbb-bh1 ENSMUSG00000052217 82.16 853.55 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
88. Hspe1 ENSMUSG00000073676 82.16 853.55 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
89. Morf4l2 ENSMUSG00000031422 82.16 853.55 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
90. Rps26 ENSMUSG00000025362 82.16 853.55 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
91. Rps4x ENSMUSG00000031320 82.16 853.55 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
92. Top1 ENSMUSG00000070544 82.16 853.55 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
93. Top2a ENSMUSG00000020914 82.16 853.55 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
94. Wbp5 82.16 853.55 WW domain binding protein 5
95. Zfp386 ENSMUSG00000042063 82.16 853.55 zinc finger protein 386 (Kruppel-like) [Source:MGI Symbol;Acc:MGI:1930708]
96. Eif4h ENSMUSG00000040731 76.69 796.72 eukaryotic translation initiation factor 4H [Source:MGI Symbol;Acc:MGI:1341822]
97. Fkbp4 ENSMUSG00000030357 76.69 796.72 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
98. Gm14303 ENSMUSG00000081344 76.69 796.72 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
99. Gm14586 ENSMUSG00000083621 76.69 796.72 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
100. Hba-x ENSMUSG00000055609 76.69 796.72 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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