Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s68.

Sample reads: 96,262. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4246.56 44114.46 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3778.60 39253.16 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Nd4 ENSMUSG00000064363 2990.91 31070.41 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Rnr2 ENSMUSG00000064339 2754.43 28613.79 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
5. mt-Nd1 ENSMUSG00000064341 2657.84 27610.39 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Atp6 ENSMUSG00000064357 2296.47 23856.37 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Co2 ENSMUSG00000064354 2148.26 22316.73 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Nd2 ENSMUSG00000064345 1179.04 12248.20 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 1085.79 11279.49 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Nd3 ENSMUSG00000064360 895.94 9307.28 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. H19 ENSMUSG00000000031 732.74 7611.91 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
12. mt-Nd5 ENSMUSG00000064367 687.78 7144.85 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
13. mt-Co3 ENSMUSG00000064358 686.11 7127.50 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
14. Hbb-y ENSMUSG00000052187 679.45 7058.32 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
15. Gm10800 ENSMUSG00000075014 612.84 6366.35 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
16. Actb ENSMUSG00000029580 526.24 5466.73 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
17. Eef1a1 ENSMUSG00000037742 499.59 5189.88 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
18. Gm13340 ENSMUSG00000083563 462.96 4809.36 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Hmga2 ENSMUSG00000056758 452.97 4705.58 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
20. Mdk ENSMUSG00000027239 442.97 4601.70 midkine [Source:MGI Symbol;Acc:MGI:96949]
21. Hba-a1 ENSMUSG00000069919 369.70 3840.55 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
22. Npm1 ENSMUSG00000057113 341.39 3546.46 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Igf2 ENSMUSG00000048583 334.73 3477.27 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
24. Hba-x ENSMUSG00000055609 318.08 3304.30 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
25. Rpsa ENSMUSG00000032518 256.46 2664.18 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
26. Tuba1b ENSMUSG00000023004 238.14 2473.87 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
27. Hbb-bh1 ENSMUSG00000052217 234.81 2439.27 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
28. mt-Rnr1 ENSMUSG00000064337 233.14 2421.92 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
29. Rpl4 ENSMUSG00000032399 224.82 2335.49 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
30. Nedd4 ENSMUSG00000032216 221.49 2300.90 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
31. Pkm ENSMUSG00000032294 214.83 2231.71 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
32. Ubb ENSMUSG00000019505 204.83 2127.83 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
33. Chchd2 ENSMUSG00000070493 196.51 2041.40 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
34. Eif4g2 ENSMUSG00000005610 194.84 2024.05 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
35. Tubb5 ENSMUSG00000001525 194.84 2024.05 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
36. Grb10 ENSMUSG00000020176 188.18 1954.87 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
37. Myl6 ENSMUSG00000090841 188.18 1954.87 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
38. Rpl23 ENSMUSG00000071415 179.85 1868.33 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
39. Tpt1 ENSMUSG00000060126 169.86 1764.55 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
40. Hsp90ab1 ENSMUSG00000023944 168.20 1747.31 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
41. Set ENSMUSG00000054766 168.20 1747.31 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
42. Rrm2 ENSMUSG00000020649 166.53 1729.96 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
43. Banf1 ENSMUSG00000024844 164.87 1712.72 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
44. Cfl1 ENSMUSG00000056201 161.54 1678.12 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
45. Hsp90aa1 ENSMUSG00000021270 161.54 1678.12 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
46. Hnrnpc ENSMUSG00000060373 159.87 1660.77 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
47. Paics ENSMUSG00000029247 159.87 1660.77 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
48. Hba-a2 ENSMUSG00000069917 154.87 1608.83 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
49. Rps20 ENSMUSG00000028234 146.55 1522.40 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
50. Ngfrap1 143.22 1487.81 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
51. Ago2 ENSMUSG00000036698 134.89 1401.28 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
52. Gcg ENSMUSG00000000394 133.23 1384.03 glucagon [Source:MGI Symbol;Acc:MGI:95674]
53. Atp5g3 ENSMUSG00000018770 129.89 1349.33 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
54. Lamp1 ENSMUSG00000031447 129.89 1349.33 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
55. Eif5a ENSMUSG00000078812 128.23 1332.09 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
56. Ybx1 ENSMUSG00000028639 124.90 1297.50 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
57. Eef1b2 ENSMUSG00000025967 123.23 1280.15 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
58. Rpl18a ENSMUSG00000045128 119.90 1245.55 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
59. Peg3 ENSMUSG00000002265 118.24 1228.31 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
60. Rps26 ENSMUSG00000025362 116.57 1210.96 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
61. U2af2 ENSMUSG00000030435 114.91 1193.72 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
62. Ywhab ENSMUSG00000018326 108.25 1124.53 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
63. Ndufa12 ENSMUSG00000020022 106.58 1107.18 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
64. Cox8a ENSMUSG00000035885 104.91 1089.83 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
65. Rps4x ENSMUSG00000031320 104.91 1089.83 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
66. Rpl41 ENSMUSG00000093674 103.25 1072.59 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
67. Wbp5 103.25 1072.59 WW domain binding protein 5
68. Hnrnpa2b1 ENSMUSG00000004980 101.58 1055.24 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
69. Top2a ENSMUSG00000020914 101.58 1055.24 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
70. Cd24a ENSMUSG00000047139 98.25 1020.65 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
71. Ccnd2 ENSMUSG00000000184 96.59 1003.40 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
72. Rps3a1 ENSMUSG00000028081 96.59 1003.40 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
73. Pabpc1 ENSMUSG00000022283 94.92 986.06 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
74. Rps5 ENSMUSG00000012848 94.92 986.06 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
75. Fkbp1a ENSMUSG00000032966 93.26 968.81 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
76. Gm5805 ENSMUSG00000061848 93.26 968.81 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
77. Hspe1 ENSMUSG00000073676 93.26 968.81 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
78. Kpnb1 ENSMUSG00000001440 93.26 968.81 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
79. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 93.26 968.81 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
80. Rpl37 ENSMUSG00000041841 91.59 951.46 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
81. Son ENSMUSG00000022961 91.59 951.46 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
82. Ywhaz ENSMUSG00000022285 89.93 934.22 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
83. Gm14303 ENSMUSG00000081344 88.26 916.87 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
84. 2810417H13Rik 86.60 899.63 RIKEN cDNA 2810417H13 gene
85. Cdk4 ENSMUSG00000006728 86.60 899.63 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
86. Sfrp1 ENSMUSG00000031548 86.60 899.63 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
87. Caprin1 ENSMUSG00000027184 84.93 882.28 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
88. Rplp1 ENSMUSG00000007892 84.93 882.28 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
89. Cdc42 ENSMUSG00000006699 83.27 865.03 cell division cycle 42 [Source:MGI Symbol;Acc:MGI:106211]
90. Col1a1 ENSMUSG00000001506 83.27 865.03 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
91. Malat1 ENSMUSG00000092341 83.27 865.03 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
92. Pbx1 ENSMUSG00000052534 83.27 865.03 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
93. Rpl26 ENSMUSG00000060938 83.27 865.03 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
94. Ywhaq ENSMUSG00000076432 83.27 865.03 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta [Source:MGI Symbol;Acc:MGI:891963]
95. Col3a1 ENSMUSG00000026043 81.60 847.68 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
96. Meg3 ENSMUSG00000021268 81.60 847.68 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
97. Ddx5 ENSMUSG00000020719 79.94 830.44 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
98. Hmgn1 ENSMUSG00000040681 79.94 830.44 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
99. Morf4l1 ENSMUSG00000062270 79.94 830.44 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
100. Ran ENSMUSG00000029430 79.94 830.44 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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