Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s67.

Sample reads: 96,243. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4438.59 46118.44 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Rnr2 ENSMUSG00000064339 4335.74 45049.79 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
3. Ptma ENSMUSG00000026238 3713.26 38582.02 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Nd4 ENSMUSG00000064363 3096.18 32170.35 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2549.48 26489.95 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Atp6 ENSMUSG00000064357 1851.21 19234.69 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Co2 ENSMUSG00000064354 1807.91 18784.79 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Nd2 ENSMUSG00000064345 1293.69 13441.87 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 1093.41 11360.90 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Nd3 ENSMUSG00000064360 1001.39 10404.78 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. Actb ENSMUSG00000029580 757.81 7873.90 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. Mdk ENSMUSG00000027239 725.33 7536.42 midkine [Source:MGI Symbol;Acc:MGI:96949]
13. mt-Nd5 ENSMUSG00000064367 676.61 7030.21 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
14. H19 ENSMUSG00000000031 671.20 6973.99 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
15. Hbb-y ENSMUSG00000052187 627.90 6524.09 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
16. Hmga2 ENSMUSG00000056758 573.77 5961.66 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
17. mt-Co3 ENSMUSG00000064358 487.16 5061.76 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. Eef1a1 ENSMUSG00000037742 411.38 4274.38 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
19. Gm10800 ENSMUSG00000075014 395.14 4105.64 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
20. Igf2 ENSMUSG00000048583 378.90 3936.90 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
21. Gm13340 ENSMUSG00000083563 351.84 3655.74 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
22. Npm1 ENSMUSG00000057113 324.77 3374.47 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. mt-Rnr1 ENSMUSG00000064337 286.88 2980.78 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
24. Hba-a1 ENSMUSG00000069919 254.41 2643.41 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
25. Hba-x ENSMUSG00000055609 248.99 2587.09 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
26. Hnrnpc ENSMUSG00000060373 238.17 2474.67 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
27. Rpsa ENSMUSG00000032518 238.17 2474.67 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
28. Grb10 ENSMUSG00000020176 232.76 2418.45 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
29. Tubb5 ENSMUSG00000001525 227.34 2362.14 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
30. Tuba1b ENSMUSG00000023004 221.93 2305.93 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
31. Eif4g2 ENSMUSG00000005610 211.10 2193.40 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
32. Pkm ENSMUSG00000032294 211.10 2193.40 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
33. Set ENSMUSG00000054766 211.10 2193.40 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
34. Myl6 ENSMUSG00000090841 194.86 2024.66 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
35. Cfl1 ENSMUSG00000056201 184.04 1912.24 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
36. Hsp90aa1 ENSMUSG00000021270 184.04 1912.24 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
37. Ndufa12 ENSMUSG00000020022 184.04 1912.24 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
38. Rrm2 ENSMUSG00000020649 173.21 1799.71 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
39. Rpl18a ENSMUSG00000045128 167.80 1743.50 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
40. Nedd4 ENSMUSG00000032216 162.39 1687.29 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
41. Rpl4 ENSMUSG00000032399 162.39 1687.29 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
42. Ubb ENSMUSG00000019505 162.39 1687.29 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
43. Cox8a ENSMUSG00000035885 156.97 1630.97 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
44. Paics ENSMUSG00000029247 156.97 1630.97 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
45. Tpt1 ENSMUSG00000060126 156.97 1630.97 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
46. Hbb-bh1 ENSMUSG00000052217 151.56 1574.76 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
47. Banf1 ENSMUSG00000024844 146.15 1518.55 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
48. Rps5 ENSMUSG00000012848 146.15 1518.55 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
49. Gcg ENSMUSG00000000394 140.74 1462.34 glucagon [Source:MGI Symbol;Acc:MGI:95674]
50. Col3a1 ENSMUSG00000026043 135.32 1406.02 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
51. Fkbp1a ENSMUSG00000032966 129.91 1349.81 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
52. Hsp90ab1 ENSMUSG00000023944 129.91 1349.81 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
53. Gm5805 ENSMUSG00000061848 124.50 1293.60 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
54. Cdk1 ENSMUSG00000019942 119.08 1237.28 cyclin-dependent kinase 1 [Source:MGI Symbol;Acc:MGI:88351]
55. Ngfrap1 119.08 1237.28 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
56. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 119.08 1237.28 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
57. Ybx1 ENSMUSG00000028639 119.08 1237.28 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
58. Eif5a ENSMUSG00000078812 113.67 1181.07 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
59. Hnrnpa2b1 ENSMUSG00000004980 113.67 1181.07 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
60. Ran ENSMUSG00000029430 113.67 1181.07 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
61. Sfrp1 ENSMUSG00000031548 113.67 1181.07 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
62. Son ENSMUSG00000022961 113.67 1181.07 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
63. Cd24a ENSMUSG00000047139 108.26 1124.86 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
64. Cdk4 ENSMUSG00000006728 108.26 1124.86 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
65. Chchd2 ENSMUSG00000070493 108.26 1124.86 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
66. Eef1b2 ENSMUSG00000025967 108.26 1124.86 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
67. Malat1 ENSMUSG00000092341 108.26 1124.86 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
68. Morf4l1 ENSMUSG00000062270 108.26 1124.86 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
69. Pabpc1 ENSMUSG00000022283 108.26 1124.86 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
70. Rpl23 ENSMUSG00000071415 108.26 1124.86 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
71. Rps26 ENSMUSG00000025362 108.26 1124.86 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
72. Sub1 ENSMUSG00000022205 108.26 1124.86 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
73. Ywhab ENSMUSG00000018326 108.26 1124.86 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
74. Atp5g3 ENSMUSG00000018770 102.85 1068.65 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
75. Rpl37 ENSMUSG00000041841 102.85 1068.65 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
76. Tecr ENSMUSG00000031708 102.85 1068.65 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
77. Wbp5 102.85 1068.65 WW domain binding protein 5
78. Anp32b ENSMUSG00000028333 97.43 1012.33 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
79. Gm17132 ENSMUSG00000061331 97.43 1012.33 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
80. Hmgn1 ENSMUSG00000040681 97.43 1012.33 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
81. Igfbp4 ENSMUSG00000017493 97.43 1012.33 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
82. Peg3 ENSMUSG00000002265 97.43 1012.33 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
83. Rps20 ENSMUSG00000028234 97.43 1012.33 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
84. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 92.02 956.12 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
85. Meg3 ENSMUSG00000021268 92.02 956.12 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
86. Tmpo ENSMUSG00000019961 92.02 956.12 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
87. Eef2 ENSMUSG00000034994 86.61 899.91 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
88. Kpnb1 ENSMUSG00000001440 86.61 899.91 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
89. Pbx1 ENSMUSG00000052534 86.61 899.91 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
90. Trim28 ENSMUSG00000005566 86.61 899.91 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
91. U2af2 ENSMUSG00000030435 86.61 899.91 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
92. Cks1b ENSMUSG00000028044 81.19 843.59 CDC28 protein kinase 1b [Source:MGI Symbol;Acc:MGI:1889208]
93. Ddx3x ENSMUSG00000000787 81.19 843.59 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Source:MGI Symbol;Acc:MGI:103064]
94. Ddx5 ENSMUSG00000020719 81.19 843.59 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
95. Hnrnpk ENSMUSG00000021546 81.19 843.59 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
96. Plagl1 ENSMUSG00000019817 81.19 843.59 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
97. Rpl32 ENSMUSG00000057841 81.19 843.59 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
98. Rps15 ENSMUSG00000063457 81.19 843.59 ribosomal protein S15 [Source:MGI Symbol;Acc:MGI:98117]
99. Rps3a1 ENSMUSG00000028081 81.19 843.59 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
100. Ago2 ENSMUSG00000036698 75.78 787.38 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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