Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s66.

Sample reads: 96,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 4784.09 49708.13 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. Ptma ENSMUSG00000026238 4034.93 41924.13 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Cytb ENSMUSG00000064370 3246.35 33730.55 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Nd4 ENSMUSG00000064363 2260.61 23488.41 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2102.90 21849.76 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Atp6 ENSMUSG00000064357 1853.18 19255.09 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Co2 ENSMUSG00000064354 1748.03 18162.55 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Nd2 ENSMUSG00000064345 1301.17 13519.55 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Nd5 ENSMUSG00000064367 933.16 9695.81 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
10. mt-Co1 ENSMUSG00000064351 920.02 9559.28 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. Actb ENSMUSG00000029580 814.87 8466.74 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. Gm10800 ENSMUSG00000075014 775.44 8057.05 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
13. H19 ENSMUSG00000000031 722.87 7510.84 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
14. Mdk ENSMUSG00000027239 657.16 6828.09 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. mt-Nd3 ENSMUSG00000064360 591.44 6145.24 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
16. mt-Co3 ENSMUSG00000064358 486.29 5052.70 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
17. Hmga2 ENSMUSG00000056758 460.01 4779.64 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
18. mt-Rnr1 ENSMUSG00000064337 446.87 4643.11 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
19. Hbb-y ENSMUSG00000052187 394.29 4096.79 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
20. Eef1a1 ENSMUSG00000037742 381.15 3960.26 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
21. Igf2 ENSMUSG00000048583 381.15 3960.26 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
22. Nedd4 ENSMUSG00000032216 302.29 3140.88 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
23. Gm13340 ENSMUSG00000083563 276.01 2867.83 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
24. Malat1 ENSMUSG00000092341 262.86 2731.19 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
25. Peg3 ENSMUSG00000002265 249.72 2594.67 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
26. Npm1 ENSMUSG00000057113 236.58 2458.14 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
27. Rpsa ENSMUSG00000032518 236.58 2458.14 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
28. Ubb ENSMUSG00000019505 236.58 2458.14 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
29. Grb10 ENSMUSG00000020176 223.43 2321.50 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
30. Rpl4 ENSMUSG00000032399 223.43 2321.50 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
31. Tuba1b ENSMUSG00000023004 223.43 2321.50 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
32. Eif5a ENSMUSG00000078812 197.15 2048.45 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
33. Ngfrap1 197.15 2048.45 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
34. Set ENSMUSG00000054766 197.15 2048.45 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
35. Tubb5 ENSMUSG00000001525 197.15 2048.45 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
36. Hba-a1 ENSMUSG00000069919 184.00 1911.82 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
37. Hsp90ab1 ENSMUSG00000023944 184.00 1911.82 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
38. Igfbp4 ENSMUSG00000017493 184.00 1911.82 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
39. Rps20 ENSMUSG00000028234 184.00 1911.82 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
40. Gm17132 ENSMUSG00000061331 170.86 1775.29 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
41. H3f3b ENSMUSG00000016559 170.86 1775.29 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
42. Pkm ENSMUSG00000032294 170.86 1775.29 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
43. Tpt1 ENSMUSG00000060126 170.86 1775.29 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
44. Ybx1 ENSMUSG00000028639 170.86 1775.29 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
45. Ywhab ENSMUSG00000018326 170.86 1775.29 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
46. Ago2 ENSMUSG00000036698 157.72 1638.76 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
47. Cfl1 ENSMUSG00000056201 157.72 1638.76 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
48. Rpl37 ENSMUSG00000041841 157.72 1638.76 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
49. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 157.72 1638.76 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
50. Banf1 ENSMUSG00000024844 144.57 1502.13 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
51. Pbx1 ENSMUSG00000052534 144.57 1502.13 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
52. Plagl1 ENSMUSG00000019817 144.57 1502.13 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
53. Chchd2 ENSMUSG00000070493 131.43 1365.60 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
54. Hba-x ENSMUSG00000055609 131.43 1365.60 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
55. Hnrnpa0 ENSMUSG00000007836 131.43 1365.60 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
56. Rpl23 ENSMUSG00000071415 131.43 1365.60 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
57. Tecr ENSMUSG00000031708 131.43 1365.60 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
58. 2810417H13Rik 118.29 1229.07 RIKEN cDNA 2810417H13 gene
59. Cox8a ENSMUSG00000035885 118.29 1229.07 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
60. Dynll1 ENSMUSG00000009013 118.29 1229.07 dynein light chain LC8-type 1 [Source:MGI Symbol;Acc:MGI:1861457]
61. Eef1b2 ENSMUSG00000025967 118.29 1229.07 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
62. Hbb-bh1 ENSMUSG00000052217 118.29 1229.07 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
63. Morf4l1 ENSMUSG00000062270 118.29 1229.07 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
64. Myl6 ENSMUSG00000090841 118.29 1229.07 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
65. Rpl18a ENSMUSG00000045128 118.29 1229.07 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
66. Rps3a1 ENSMUSG00000028081 118.29 1229.07 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
67. Rrm2 ENSMUSG00000020649 118.29 1229.07 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
68. Trim28 ENSMUSG00000005566 118.29 1229.07 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
69. Cdk4 ENSMUSG00000006728 105.14 1092.44 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
70. Cltc ENSMUSG00000047126 105.14 1092.44 clathrin, heavy polypeptide (Hc) [Source:MGI Symbol;Acc:MGI:2388633]
71. Eif4g2 ENSMUSG00000005610 105.14 1092.44 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
72. H2afy ENSMUSG00000015937 105.14 1092.44 H2A histone family, member Y [Source:MGI Symbol;Acc:MGI:1349392]
73. Hnrnpc ENSMUSG00000060373 105.14 1092.44 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
74. Hsp90aa1 ENSMUSG00000021270 105.14 1092.44 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
75. Marcksl1 ENSMUSG00000047945 105.14 1092.44 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
76. Mpzl1 ENSMUSG00000026566 105.14 1092.44 myelin protein zero-like 1 [Source:MGI Symbol;Acc:MGI:1915731]
77. Pbx3 ENSMUSG00000038718 105.14 1092.44 pre B cell leukemia homeobox 3 [Source:MGI Symbol;Acc:MGI:97496]
78. Ran ENSMUSG00000029430 105.14 1092.44 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
79. Rplp1 ENSMUSG00000007892 105.14 1092.44 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
80. Rps26 ENSMUSG00000025362 105.14 1092.44 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
81. Sfrp1 ENSMUSG00000031548 105.14 1092.44 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
82. Sparc ENSMUSG00000018593 105.14 1092.44 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
83. Ssbp3 ENSMUSG00000061887 105.14 1092.44 single-stranded DNA binding protein 3 [Source:MGI Symbol;Acc:MGI:1919725]
84. Ywhae ENSMUSG00000020849 105.14 1092.44 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
85. Anp32b ENSMUSG00000028333 92.00 955.91 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
86. Ccnd2 ENSMUSG00000000184 92.00 955.91 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
87. Cdca4 ENSMUSG00000047832 92.00 955.91 cell division cycle associated 4 [Source:MGI Symbol;Acc:MGI:1919213]
88. Cks1b ENSMUSG00000028044 92.00 955.91 CDC28 protein kinase 1b [Source:MGI Symbol;Acc:MGI:1889208]
89. Col3a1 ENSMUSG00000026043 92.00 955.91 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
90. Cse1l ENSMUSG00000002718 92.00 955.91 chromosome segregation 1-like (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1339951]
91. Fth1 ENSMUSG00000024661 92.00 955.91 ferritin heavy polypeptide 1 [Source:MGI Symbol;Acc:MGI:95588]
92. Gm13936 ENSMUSG00000085444 92.00 955.91 predicted gene 13936 [Source:MGI Symbol;Acc:MGI:3651878]
93. Gm5805 ENSMUSG00000061848 92.00 955.91 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
94. Marcks ENSMUSG00000069662 92.00 955.91 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
95. Mrfap1 ENSMUSG00000055302 92.00 955.91 Morf4 family associated protein 1 [Source:MGI Symbol;Acc:MGI:1914818]
96. Oaz1 ENSMUSG00000035242 92.00 955.91 ornithine decarboxylase antizyme 1 [Source:MGI Symbol;Acc:MGI:109433]
97. Son ENSMUSG00000022961 92.00 955.91 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
98. Stmn1 ENSMUSG00000028832 92.00 955.91 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
99. Ttc9c ENSMUSG00000071660 92.00 955.91 tetratricopeptide repeat domain 9C [Source:MGI Symbol;Acc:MGI:1917637]
100. U2af2 ENSMUSG00000030435 92.00 955.91 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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