Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s64.

Sample reads: 96,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4611.54 47916.59 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 2764.46 28724.35 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd4 ENSMUSG00000064363 2733.70 28404.74 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Rnr2 ENSMUSG00000064339 2450.01 25457.03 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
5. mt-Nd1 ENSMUSG00000064341 2286.63 23759.42 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Atp6 ENSMUSG00000064357 1978.33 20556.00 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Co2 ENSMUSG00000064354 1975.59 20527.53 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Nd2 ENSMUSG00000064345 1087.60 11300.80 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 1055.47 10966.95 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Nd3 ENSMUSG00000064360 718.46 7465.22 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. mt-Nd5 ENSMUSG00000064367 715.73 7436.85 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. Actb ENSMUSG00000029580 596.78 6200.89 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. H19 ENSMUSG00000000031 594.05 6172.53 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
14. Hbb-y ENSMUSG00000052187 574.90 5973.55 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
15. mt-Co3 ENSMUSG00000064358 564.65 5867.04 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. Mdk ENSMUSG00000027239 546.19 5675.23 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. Hmga2 ENSMUSG00000056758 518.85 5391.15 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
18. Eef1a1 ENSMUSG00000037742 438.87 4560.12 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
19. Igf2 ENSMUSG00000048583 438.87 4560.12 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
20. Gm13340 ENSMUSG00000083563 379.40 3942.19 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. Hba-x ENSMUSG00000055609 375.29 3899.48 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
22. Hba-a1 ENSMUSG00000069919 333.59 3466.19 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
23. Npm1 ENSMUSG00000057113 312.40 3246.02 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Nedd4 ENSMUSG00000032216 270.02 2805.67 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Tubb5 ENSMUSG00000001525 257.03 2670.69 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Rpsa ENSMUSG00000032518 249.51 2592.55 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
27. Hbb-bh1 ENSMUSG00000052217 239.26 2486.05 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
28. Tuba1b ENSMUSG00000023004 236.52 2457.58 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
29. mt-Rnr1 ENSMUSG00000064337 234.47 2436.28 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
30. Hsp90ab1 ENSMUSG00000023944 221.49 2301.41 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
31. Ubb ENSMUSG00000019505 221.49 2301.41 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
32. Cfl1 ENSMUSG00000056201 215.33 2237.40 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
33. Set ENSMUSG00000054766 200.98 2088.30 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
34. Pkm ENSMUSG00000032294 197.56 2052.76 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
35. Rpl4 ENSMUSG00000032399 196.88 2045.70 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
36. Gm10800 ENSMUSG00000075014 186.62 1939.09 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
37. Grb10 ENSMUSG00000020176 186.62 1939.09 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
38. Eif4g2 ENSMUSG00000005610 172.27 1789.99 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
39. U2af2 ENSMUSG00000030435 170.90 1775.75 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
40. Banf1 ENSMUSG00000024844 170.22 1768.69 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
41. Myl6 ENSMUSG00000090841 168.85 1754.45 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
42. Hnrnpc ENSMUSG00000060373 165.43 1718.91 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
43. Chchd2 ENSMUSG00000070493 155.86 1619.48 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
44. Rpl23 ENSMUSG00000071415 155.86 1619.48 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
45. Ybx1 ENSMUSG00000028639 153.13 1591.11 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
46. Atp5g3 ENSMUSG00000018770 149.02 1548.40 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
47. Rrm2 ENSMUSG00000020649 149.02 1548.40 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
48. Peg3 ENSMUSG00000002265 142.87 1484.50 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
49. Ago2 ENSMUSG00000036698 141.50 1470.27 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
50. Eif5a ENSMUSG00000078812 140.82 1463.20 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
51. Hba-a2 ENSMUSG00000069917 140.14 1456.14 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
52. Tpt1 ENSMUSG00000060126 137.40 1427.67 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
53. Fkbp1a ENSMUSG00000032966 136.72 1420.60 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
54. Paics ENSMUSG00000029247 136.72 1420.60 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
55. Eef1b2 ENSMUSG00000025967 132.62 1378.00 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
56. Hsp90aa1 ENSMUSG00000021270 132.62 1378.00 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
57. Ngfrap1 130.57 1356.70 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
58. Ywhab ENSMUSG00000018326 128.52 1335.40 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
59. Pbx1 ENSMUSG00000052534 125.10 1299.86 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
60. Ran ENSMUSG00000029430 121.68 1264.33 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
61. Pabpc1 ENSMUSG00000022283 121.00 1257.26 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
62. Rps20 ENSMUSG00000028234 117.58 1221.72 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
63. Rps26 ENSMUSG00000025362 116.21 1207.49 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
64. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 115.53 1200.42 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
65. Rps4x ENSMUSG00000031320 112.11 1164.89 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
66. Wbp5 112.11 1164.89 WW domain binding protein 5
67. Sub1 ENSMUSG00000022205 109.38 1136.52 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
68. Trim28 ENSMUSG00000005566 109.38 1136.52 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
69. Gm5805 ENSMUSG00000061848 106.64 1108.05 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
70. Pcbp1 ENSMUSG00000051695 106.64 1108.05 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
71. Lamp1 ENSMUSG00000031447 105.96 1100.99 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
72. Ndufa12 ENSMUSG00000020022 104.59 1086.75 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
73. Sfrp1 ENSMUSG00000031548 104.59 1086.75 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
74. Anp32b ENSMUSG00000028333 101.17 1051.22 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
75. Rpl18a ENSMUSG00000045128 101.17 1051.22 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
76. Malat1 ENSMUSG00000092341 95.02 987.31 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
77. Cox8a ENSMUSG00000035885 94.34 980.25 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
78. Col3a1 ENSMUSG00000026043 93.65 973.08 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
79. Hmgn1 ENSMUSG00000040681 92.97 966.01 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
80. Gm14303 ENSMUSG00000081344 90.92 944.71 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
81. Tecr ENSMUSG00000031708 88.87 923.41 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
82. Plagl1 ENSMUSG00000019817 88.18 916.24 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
83. Hnrnpa2b1 ENSMUSG00000004980 87.50 909.18 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
84. Marcksl1 ENSMUSG00000047945 87.50 909.18 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
85. Gm26924 Gm26924 86.13 894.94
86. Cdk4 ENSMUSG00000006728 85.45 887.88 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
87. Hspe1 ENSMUSG00000073676 84.08 873.64 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
88. Rpl41 ENSMUSG00000093674 84.08 873.64 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
89. Eef2 ENSMUSG00000034994 82.72 859.51 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
90. Top2a ENSMUSG00000020914 82.72 859.51 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
91. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 81.35 845.27 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
92. Cdc42 ENSMUSG00000006699 80.66 838.10 cell division cycle 42 [Source:MGI Symbol;Acc:MGI:106211]
93. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 79.98 831.04 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
94. Rps3a1 ENSMUSG00000028081 79.98 831.04 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
95. Rps5 ENSMUSG00000012848 78.61 816.80 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
96. Stmn1 ENSMUSG00000028832 78.61 816.80 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
97. Cd24a ENSMUSG00000047139 76.56 795.50 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
98. Gpc3 ENSMUSG00000055653 76.56 795.50 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
99. Igfbp4 ENSMUSG00000017493 76.56 795.50 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
100. Tmpo ENSMUSG00000019961 76.56 795.50 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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