Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s63.

Sample reads: 96,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4251.60 44176.08 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3861.73 40125.16 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Rnr2 ENSMUSG00000064339 2625.17 27276.73 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
4. mt-Nd1 ENSMUSG00000064341 2591.00 26921.68 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Nd4 ENSMUSG00000064363 2573.56 26740.47 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Co2 ENSMUSG00000064354 2103.48 21856.13 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Atp6 ENSMUSG00000064357 1784.75 18544.38 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
8. mt-Nd2 ENSMUSG00000064345 1021.05 10609.18 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 1000.83 10399.09 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Nd3 ENSMUSG00000064360 778.34 8087.31 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. Mdk ENSMUSG00000027239 777.65 8080.14 midkine [Source:MGI Symbol;Acc:MGI:96949]
12. H19 ENSMUSG00000000031 714.18 7420.66 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. Hbb-y ENSMUSG00000052187 700.23 7275.71 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
14. mt-Nd5 ENSMUSG00000064367 673.73 7000.37 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
15. mt-Co3 ENSMUSG00000064358 624.21 6485.83 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. Hmga2 ENSMUSG00000056758 571.20 5935.03 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
17. mt-Rnr1 ENSMUSG00000064337 485.42 5043.74 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
18. Actb ENSMUSG00000029580 484.72 5036.46 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
19. Hba-a1 ENSMUSG00000069919 428.23 4449.51 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
20. Eef1a1 ENSMUSG00000037742 414.98 4311.83 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
21. Igf2 ENSMUSG00000048583 410.10 4261.13 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
22. Hba-x ENSMUSG00000055609 367.55 3819.01 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
23. Gm13340 ENSMUSG00000083563 364.76 3790.02 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
24. Gm10800 ENSMUSG00000075014 300.60 3123.37 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
25. Tuba1b ENSMUSG00000023004 285.95 2971.15 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. Rpsa ENSMUSG00000032518 268.51 2789.94 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
27. Npm1 ENSMUSG00000057113 267.12 2775.50 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
28. Hsp90ab1 ENSMUSG00000023944 254.57 2645.10 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
29. Ubb ENSMUSG00000019505 243.41 2529.14 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
30. Nedd4 ENSMUSG00000032216 241.31 2507.32 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
31. Hbb-bh1 ENSMUSG00000052217 239.92 2492.88 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
32. Cfl1 ENSMUSG00000056201 228.76 2376.92 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
33. Hba-a2 ENSMUSG00000069917 217.60 2260.96 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
34. Tubb5 ENSMUSG00000001525 200.86 2087.03 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
35. Pkm ENSMUSG00000032294 192.49 2000.06 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
36. Grb10 ENSMUSG00000020176 183.43 1905.92 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
37. Set ENSMUSG00000054766 182.73 1898.65 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
38. Rrm2 ENSMUSG00000020649 161.81 1681.28 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
39. Banf1 ENSMUSG00000024844 159.02 1652.29 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
40. Fkbp1a ENSMUSG00000032966 158.32 1645.02 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
41. Tpt1 ENSMUSG00000060126 158.32 1645.02 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
42. Eif4g2 ENSMUSG00000005610 150.65 1565.32 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
43. U2af2 ENSMUSG00000030435 149.95 1558.05 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
44. Peg3 ENSMUSG00000002265 145.07 1507.34 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
45. Eif5a ENSMUSG00000078812 142.98 1485.63 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
46. Rpl4 ENSMUSG00000032399 137.40 1427.65 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
47. Chchd2 ENSMUSG00000070493 136.70 1420.38 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
48. Paics ENSMUSG00000029247 136.00 1413.10 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
49. Rpl23 ENSMUSG00000071415 133.91 1391.39 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
50. Rpl18a ENSMUSG00000045128 133.21 1384.11 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
51. Ybx1 ENSMUSG00000028639 132.51 1376.84 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
52. Rps26 ENSMUSG00000025362 131.12 1362.40 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
53. Ywhab ENSMUSG00000018326 129.03 1340.68 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
54. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 128.33 1333.41 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
55. Ndufa12 ENSMUSG00000020022 126.24 1311.69 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
56. Ngfrap1 124.14 1289.87 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
57. Myl6 ENSMUSG00000090841 122.75 1275.43 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
58. Gm5805 ENSMUSG00000061848 121.35 1260.88 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
59. Hnrnpc ENSMUSG00000060373 117.87 1224.72 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
60. Pbx1 ENSMUSG00000052534 117.87 1224.72 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
61. Atp5g3 ENSMUSG00000018770 116.47 1210.18 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
62. Trim28 ENSMUSG00000005566 113.68 1181.19 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
63. Ago2 ENSMUSG00000036698 112.99 1174.02 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
64. Rps20 ENSMUSG00000028234 112.99 1174.02 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
65. Pabpc1 ENSMUSG00000022283 108.80 1130.48 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
66. Eef1b2 ENSMUSG00000025967 106.71 1108.77 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
67. Cdk4 ENSMUSG00000006728 106.01 1101.49 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
68. Hsp90aa1 ENSMUSG00000021270 106.01 1101.49 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
69. Sfrp1 ENSMUSG00000031548 101.83 1058.06 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
70. Hmgn1 ENSMUSG00000040681 98.34 1021.80 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
71. Tecr ENSMUSG00000031708 96.94 1007.25 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
72. Wbp5 94.85 985.54 WW domain binding protein 5
73. Rps5 ENSMUSG00000012848 94.15 978.26 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
74. Lamp1 ENSMUSG00000031447 93.46 971.09 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
75. Igfbp4 ENSMUSG00000017493 91.36 949.27 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
76. Rps4x ENSMUSG00000031320 90.67 942.10 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
77. Eef2 ENSMUSG00000034994 89.27 927.56 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
78. Ywhae ENSMUSG00000020849 88.58 920.39 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
79. Kpnb1 ENSMUSG00000001440 87.88 913.11 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
80. Sub1 ENSMUSG00000022205 87.88 913.11 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
81. Anp32b ENSMUSG00000028333 87.18 905.84 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
82. Pcbp1 ENSMUSG00000051695 87.18 905.84 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
83. Ran ENSMUSG00000029430 85.79 891.40 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
84. Rps3a1 ENSMUSG00000028081 85.79 891.40 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
85. Stmn1 ENSMUSG00000028832 84.39 876.85 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
86. Cox8a ENSMUSG00000035885 83.69 869.58 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
87. Top2a ENSMUSG00000020914 81.60 847.86 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
88. Gpc3 ENSMUSG00000055653 80.90 840.59 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
89. Ddx39b ENSMUSG00000019432 79.51 826.15 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
90. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 79.51 826.15 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
91. Plagl1 ENSMUSG00000019817 78.81 818.87 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
92. Cd24a ENSMUSG00000047139 78.11 811.60 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
93. Morf4l1 ENSMUSG00000062270 77.42 804.43 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
94. Rpl37 ENSMUSG00000041841 76.72 797.16 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
95. Ccnd2 ENSMUSG00000000184 76.02 789.88 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
96. Tmpo ENSMUSG00000019961 76.02 789.88 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
97. Sparc ENSMUSG00000018593 75.32 782.61 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
98. Caprin1 ENSMUSG00000027184 74.63 775.44 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
99. Rplp1 ENSMUSG00000007892 74.63 775.44 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
100. Gm14303 ENSMUSG00000081344 73.93 768.17 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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