Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Mouse_E11_5_slice_1, section s61.

Sample reads: 96,255. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4301.19 44685.42 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3310.95 34397.74 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Rnr2 ENSMUSG00000064339 3180.61 33043.62 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
4. mt-Nd4 ENSMUSG00000064363 2879.31 29913.39 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2142.13 22254.77 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Atp6 ENSMUSG00000064357 2016.87 20953.43 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Co2 ENSMUSG00000064354 2010.10 20883.10 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Nd2 ENSMUSG00000064345 1233.14 12811.19 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Nd5 ENSMUSG00000064367 1130.73 11747.25 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
10. mt-Co1 ENSMUSG00000064351 1045.25 10859.19 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. Hbb-y ENSMUSG00000052187 848.90 8819.29 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
12. mt-Nd3 ENSMUSG00000064360 801.50 8326.85 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Mdk ENSMUSG00000027239 648.31 6735.35 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. mt-Co3 ENSMUSG00000064358 639.85 6647.46 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Hba-a1 ENSMUSG00000069919 578.06 6005.51 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
16. Actb ENSMUSG00000029580 536.59 5574.68 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
17. Hmga2 ENSMUSG00000056758 512.05 5319.73 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
18. Eef1a1 ENSMUSG00000037742 471.42 4897.62 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
19. H19 ENSMUSG00000000031 471.42 4897.62 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
20. Gm13340 ENSMUSG00000083563 406.25 4220.57 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. Hba-x ENSMUSG00000055609 382.55 3974.34 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
22. Igf2 ENSMUSG00000048583 371.55 3860.06 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
23. Hbb-bh1 ENSMUSG00000052217 365.63 3798.56 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
24. mt-Rnr1 ENSMUSG00000064337 363.93 3780.90 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
25. Npm1 ENSMUSG00000057113 282.68 2936.79 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
26. Tuba1b ENSMUSG00000023004 279.30 2901.67 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
27. Tubb5 ENSMUSG00000001525 271.68 2822.51 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
28. Gm10800 ENSMUSG00000075014 246.29 2558.73 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
29. Nedd4 ENSMUSG00000032216 237.83 2470.84 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
30. Rpsa ENSMUSG00000032518 235.29 2444.45 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
31. Pkm ENSMUSG00000032294 224.28 2330.06 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
32. Hba-a2 ENSMUSG00000069917 216.67 2251.00 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
33. Ubb ENSMUSG00000019505 214.13 2224.61 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
34. Grb10 ENSMUSG00000020176 209.90 2180.67 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
35. Set ENSMUSG00000054766 192.12 1995.95 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
36. Hsp90ab1 ENSMUSG00000023944 183.66 1908.06 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
37. Peg3 ENSMUSG00000002265 181.12 1881.67 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
38. Myl6 ENSMUSG00000090841 178.58 1855.28 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
39. Rpl4 ENSMUSG00000032399 176.04 1828.89 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
40. Hnrnpc ENSMUSG00000060373 173.50 1802.51 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
41. Cfl1 ENSMUSG00000056201 168.43 1749.83 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
42. Tpt1 ENSMUSG00000060126 168.43 1749.83 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
43. Pbx1 ENSMUSG00000052534 154.88 1609.06 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
44. Eif5a ENSMUSG00000078812 148.96 1547.56 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
45. Rpl23 ENSMUSG00000071415 148.96 1547.56 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
46. Ywhab ENSMUSG00000018326 148.11 1538.73 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
47. U2af2 ENSMUSG00000030435 147.27 1530.00 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
48. Eif4g2 ENSMUSG00000005610 143.88 1494.78 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
49. Gm17132 ENSMUSG00000061331 138.80 1442.00 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
50. Rps26 ENSMUSG00000025362 138.80 1442.00 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
51. Chchd2 ENSMUSG00000070493 136.26 1415.62 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
52. Atp5g3 ENSMUSG00000018770 135.42 1406.89 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
53. Wbp5 130.34 1354.11 WW domain binding protein 5
54. Banf1 ENSMUSG00000024844 129.49 1345.28 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
55. Ngfrap1 127.80 1327.72 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
56. Paics ENSMUSG00000029247 123.57 1283.78 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
57. Eef1b2 ENSMUSG00000025967 121.03 1257.39 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
58. Ago2 ENSMUSG00000036698 120.18 1248.56 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
59. Rps20 ENSMUSG00000028234 120.18 1248.56 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
60. Sfrp1 ENSMUSG00000031548 118.49 1231.00 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
61. Ybx1 ENSMUSG00000028639 117.64 1222.17 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
62. Hsp90aa1 ENSMUSG00000021270 110.87 1151.84 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
63. Gm5805 ENSMUSG00000061848 108.33 1125.45 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
64. Trim28 ENSMUSG00000005566 108.33 1125.45 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
65. Fkbp1a ENSMUSG00000032966 107.49 1116.72 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
66. Rps4x ENSMUSG00000031320 107.49 1116.72 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
67. Rps5 ENSMUSG00000012848 105.79 1099.06 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
68. Cdkn1c ENSMUSG00000037664 104.10 1081.50 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
69. Lamp1 ENSMUSG00000031447 104.10 1081.50 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
70. Tecr ENSMUSG00000031708 102.41 1063.95 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
71. Malat1 ENSMUSG00000092341 100.72 1046.39 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
72. Sub1 ENSMUSG00000022205 100.72 1046.39 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
73. Flrt3 ENSMUSG00000051379 99.02 1028.73 fibronectin leucine rich transmembrane protein 3 [Source:MGI Symbol;Acc:MGI:1918686]
74. Ndufa12 ENSMUSG00000020022 94.79 984.78 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
75. Pabpc1 ENSMUSG00000022283 93.95 976.05 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
76. Igfbp5 ENSMUSG00000026185 93.10 967.22 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
77. Rpl18a ENSMUSG00000045128 92.25 958.39 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
78. Cdk4 ENSMUSG00000006728 88.87 923.28 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
79. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 88.87 923.28 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
80. Hmgn1 ENSMUSG00000040681 86.33 896.89 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
81. Ran ENSMUSG00000029430 86.33 896.89 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
82. Rrm2 ENSMUSG00000020649 86.33 896.89 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
83. Anp32b ENSMUSG00000028333 85.48 888.06 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
84. Col3a1 ENSMUSG00000026043 85.48 888.06 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
85. Cox8a ENSMUSG00000035885 85.48 888.06 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
86. Gpc3 ENSMUSG00000055653 84.64 879.33 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
87. Rps3a1 ENSMUSG00000028081 84.64 879.33 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
88. Son ENSMUSG00000022961 83.79 870.50 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
89. Hnrnpa2b1 ENSMUSG00000004980 82.94 861.67 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
90. Eef2 ENSMUSG00000034994 82.10 852.94 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
91. Pcbp1 ENSMUSG00000051695 82.10 852.94 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
92. Sparc ENSMUSG00000018593 79.56 826.56 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
93. Ddx5 ENSMUSG00000020719 78.71 817.72 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
94. Caprin1 ENSMUSG00000027184 77.86 808.89 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
95. Gm21897 ENSMUSG00000094472 77.86 808.89 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
96. Hbb-bt ENSMUSG00000073940 77.86 808.89 hemoglobin, beta adult t chain [Source:MGI Symbol;Acc:MGI:5474850]
97. Rplp1 ENSMUSG00000007892 77.86 808.89 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
98. Srsf3 ENSMUSG00000071172 77.86 808.89 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
99. 2810417H13Rik 74.48 773.78 RIKEN cDNA 2810417H13 gene
100. Pbrm1 ENSMUSG00000042323 74.48 773.78 polybromo 1 [Source:MGI Symbol;Acc:MGI:1923998]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA