Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s59.

Sample reads: 96,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4208.49 43730.13 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3806.42 39552.25 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Rnr2 ENSMUSG00000064339 2958.17 30738.14 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
4. mt-Nd4 ENSMUSG00000064363 2750.20 28577.14 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2432.58 25276.77 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 2175.46 22605.05 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Atp6 ENSMUSG00000064357 2006.56 20850.03 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
8. mt-Nd2 ENSMUSG00000064345 1148.23 11931.18 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Nd5 ENSMUSG00000064367 1128.06 11721.59 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
10. mt-Co1 ENSMUSG00000064351 1014.62 10542.85 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. Mdk ENSMUSG00000027239 869.68 9036.78 midkine [Source:MGI Symbol;Acc:MGI:96949]
12. H19 ENSMUSG00000000031 746.16 7753.30 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. Hbb-y ENSMUSG00000052187 704.57 7321.14 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
14. mt-Nd3 ENSMUSG00000064360 703.31 7308.05 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
15. Actb ENSMUSG00000029580 651.63 6771.04 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
16. mt-Co3 ENSMUSG00000064358 547.02 5684.05 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
17. Igf2 ENSMUSG00000048583 470.13 4885.09 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. Hmga2 ENSMUSG00000056758 446.18 4636.23 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
19. Gm13340 ENSMUSG00000083563 366.78 3811.19 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Gm10800 ENSMUSG00000075014 355.43 3693.25 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
21. Eef1a1 ENSMUSG00000037742 354.17 3680.16 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
22. Hba-a1 ENSMUSG00000069919 340.31 3536.14 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
23. Hba-x ENSMUSG00000055609 318.88 3313.46 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
24. mt-Rnr1 ENSMUSG00000064337 263.42 2737.18 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
25. Rpsa ENSMUSG00000032518 231.91 2409.76 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
26. Nedd4 ENSMUSG00000032216 223.09 2318.11 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Tuba1b ENSMUSG00000023004 220.57 2291.93 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
28. Hsp90ab1 ENSMUSG00000023944 213.01 2213.37 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
29. Pkm ENSMUSG00000032294 213.01 2213.37 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
30. Ubb ENSMUSG00000019505 211.75 2200.28 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Npm1 ENSMUSG00000057113 202.92 2108.53 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
32. Tpt1 ENSMUSG00000060126 200.40 2082.34 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
33. Hbb-bh1 ENSMUSG00000052217 194.10 2016.88 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
34. Grb10 ENSMUSG00000020176 191.58 1990.69 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
35. Peg3 ENSMUSG00000002265 182.76 1899.05 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
36. Myl6 ENSMUSG00000090841 180.24 1872.86 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
37. Set ENSMUSG00000054766 168.89 1754.92 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
38. Banf1 ENSMUSG00000024844 166.37 1728.74 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
39. Rpl4 ENSMUSG00000032399 165.11 1715.65 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
40. Tubb5 ENSMUSG00000001525 163.85 1702.55 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
41. Pbx1 ENSMUSG00000052534 161.33 1676.37 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
42. Cfl1 ENSMUSG00000056201 160.07 1663.28 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
43. Hba-a2 ENSMUSG00000069917 152.51 1584.72 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
44. Rpl23 ENSMUSG00000071415 146.21 1519.26 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
45. Eif4g2 ENSMUSG00000005610 138.64 1440.60 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
46. Rpl18a ENSMUSG00000045128 136.12 1414.41 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
47. Hnrnpc ENSMUSG00000060373 134.86 1401.32 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
48. U2af2 ENSMUSG00000030435 129.82 1348.95 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
49. Ybx1 ENSMUSG00000028639 129.82 1348.95 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
50. Eif5a ENSMUSG00000078812 128.56 1335.86 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
51. Cdkn1c ENSMUSG00000037664 127.30 1322.77 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
52. Chchd2 ENSMUSG00000070493 124.78 1296.58 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
53. Rrm2 ENSMUSG00000020649 124.78 1296.58 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
54. Hsp90aa1 ENSMUSG00000021270 121.00 1257.30 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
55. Ywhab ENSMUSG00000018326 121.00 1257.30 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
56. Gm5805 ENSMUSG00000061848 119.74 1244.21 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
57. Fkbp1a ENSMUSG00000032966 118.48 1231.12 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
58. Rps20 ENSMUSG00000028234 114.70 1191.84 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
59. Ago2 ENSMUSG00000036698 113.44 1178.75 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
60. Cdk4 ENSMUSG00000006728 113.44 1178.75 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
61. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 112.18 1165.65 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
62. Sfrp1 ENSMUSG00000031548 109.66 1139.47 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
63. Ngfrap1 108.39 1126.27 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
64. Ndufa12 ENSMUSG00000020022 107.13 1113.18 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
65. Atp5g3 ENSMUSG00000018770 104.61 1087.00 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
66. Lamp1 ENSMUSG00000031447 104.61 1087.00 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
67. Rps26 ENSMUSG00000025362 104.61 1087.00 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
68. Flrt3 ENSMUSG00000051379 103.35 1073.90 fibronectin leucine rich transmembrane protein 3 [Source:MGI Symbol;Acc:MGI:1918686]
69. Gpc3 ENSMUSG00000055653 102.09 1060.81 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
70. Rps5 ENSMUSG00000012848 102.09 1060.81 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
71. Paics ENSMUSG00000029247 100.83 1047.72 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
72. Gm17132 ENSMUSG00000061331 98.31 1021.53 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
73. Igfbp5 ENSMUSG00000026185 98.31 1021.53 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
74. Pabpc1 ENSMUSG00000022283 98.31 1021.53 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
75. Ran ENSMUSG00000029430 95.79 995.35 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
76. Wbp5 95.79 995.35 WW domain binding protein 5
77. Marcks ENSMUSG00000069662 94.53 982.25 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
78. Pcbp1 ENSMUSG00000051695 93.27 969.16 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
79. Sparc ENSMUSG00000018593 93.27 969.16 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
80. Eef1b2 ENSMUSG00000025967 90.75 942.98 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
81. Rps4x ENSMUSG00000031320 90.75 942.98 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
82. Col1a2 ENSMUSG00000029661 88.23 916.79 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
83. Hmgn1 ENSMUSG00000040681 88.23 916.79 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
84. Arpc2 ENSMUSG00000006304 86.97 903.70 actin related protein 2/3 complex, subunit 2 [Source:MGI Symbol;Acc:MGI:1923959]
85. Igfbp4 ENSMUSG00000017493 85.71 890.61 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
86. Sub1 ENSMUSG00000022205 84.45 877.51 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
87. Tsc22d1 ENSMUSG00000022010 84.45 877.51 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
88. Meg3 ENSMUSG00000021268 83.19 864.42 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
89. Ywhae ENSMUSG00000020849 83.19 864.42 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
90. H3f3b ENSMUSG00000016559 81.93 851.33 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
91. Top2a ENSMUSG00000020914 81.93 851.33 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
92. Cox8a ENSMUSG00000035885 80.67 838.24 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
93. Trim28 ENSMUSG00000005566 80.67 838.24 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
94. Gm14303 ENSMUSG00000081344 79.41 825.14 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
95. Tuba1a ENSMUSG00000072235 79.41 825.14 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
96. Atxn7l3b ENSMUSG00000074748 78.15 812.05 ataxin 7-like 3B [Source:MGI Symbol;Acc:MGI:1914971]
97. Col1a1 ENSMUSG00000001506 78.15 812.05 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
98. Morf4l1 ENSMUSG00000062270 78.15 812.05 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
99. Tecr ENSMUSG00000031708 78.15 812.05 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
100. Plagl1 ENSMUSG00000019817 76.88 798.85 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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