Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s58.

Sample reads: 96,236. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4708.57 48927.27 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 4398.99 45710.39 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Rnr2 ENSMUSG00000064339 3139.05 32618.21 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
4. mt-Co2 ENSMUSG00000064354 2816.16 29263.03 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd4 ENSMUSG00000064363 2712.96 28190.67 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Nd1 ENSMUSG00000064341 2248.60 23365.45 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Atp6 ENSMUSG00000064357 2037.22 21168.98 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
8. mt-Nd2 ENSMUSG00000064345 1066.88 11086.07 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 1026.93 10670.94 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Nd3 ENSMUSG00000064360 922.07 9581.33 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. mt-Co3 ENSMUSG00000064358 770.61 8007.49 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. Mdk ENSMUSG00000027239 694.05 7211.95 midkine [Source:MGI Symbol;Acc:MGI:96949]
13. Actb ENSMUSG00000029580 620.82 6451.01 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. mt-Nd5 ENSMUSG00000064367 587.53 6105.09 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
15. H19 ENSMUSG00000000031 577.54 6001.28 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
16. Gm10800 ENSMUSG00000075014 537.60 5586.26 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
17. Hbb-y ENSMUSG00000052187 535.93 5568.91 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
18. Igf2 ENSMUSG00000048583 484.34 5032.83 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
19. Eef1a1 ENSMUSG00000037742 421.09 4375.59 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
20. Hmga2 ENSMUSG00000056758 409.44 4254.54 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
21. Gm13340 ENSMUSG00000083563 376.15 3908.62 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
22. mt-Rnr1 ENSMUSG00000064337 366.17 3804.91 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
23. Hba-a1 ENSMUSG00000069919 337.87 3510.84 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
24. Tuba1b ENSMUSG00000023004 311.24 3234.13 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
25. Nedd4 ENSMUSG00000032216 284.61 2957.41 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
26. Npm1 ENSMUSG00000057113 271.30 2819.11 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
27. Hba-x ENSMUSG00000055609 249.66 2594.24 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
28. Rpsa ENSMUSG00000032518 223.03 2317.53 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
29. Pkm ENSMUSG00000032294 213.04 2213.72 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
30. Tubb5 ENSMUSG00000001525 206.38 2144.52 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
31. Hbb-bh1 ENSMUSG00000052217 198.06 2058.06 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
32. Hsp90ab1 ENSMUSG00000023944 186.41 1937.01 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
33. Grb10 ENSMUSG00000020176 183.08 1902.40 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
34. Pbx1 ENSMUSG00000052534 179.75 1867.80 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
35. Rpl23 ENSMUSG00000071415 173.10 1798.70 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
36. Hnrnpc ENSMUSG00000060373 169.77 1764.10 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
37. Peg3 ENSMUSG00000002265 169.77 1764.10 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
38. Cfl1 ENSMUSG00000056201 168.10 1746.75 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
39. Hba-a2 ENSMUSG00000069917 158.12 1643.04 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
40. Set ENSMUSG00000054766 151.46 1573.84 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
41. Myl6 ENSMUSG00000090841 149.80 1556.59 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
42. Chchd2 ENSMUSG00000070493 146.47 1521.99 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
43. Eif4g2 ENSMUSG00000005610 146.47 1521.99 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
44. Rpl4 ENSMUSG00000032399 146.47 1521.99 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
45. Cdkn1c ENSMUSG00000037664 141.47 1470.03 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
46. Eif5a ENSMUSG00000078812 138.14 1435.43 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
47. Ngfrap1 138.14 1435.43 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
48. Ubb ENSMUSG00000019505 134.82 1400.93 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
49. Gm17132 ENSMUSG00000061331 131.49 1366.33 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
50. Banf1 ENSMUSG00000024844 128.16 1331.72 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
51. Tpt1 ENSMUSG00000060126 128.16 1331.72 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
52. Rpl18a ENSMUSG00000045128 124.83 1297.12 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
53. Rps5 ENSMUSG00000012848 124.83 1297.12 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
54. Sfrp1 ENSMUSG00000031548 124.83 1297.12 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
55. Cdk4 ENSMUSG00000006728 123.17 1279.87 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
56. Sub1 ENSMUSG00000022205 123.17 1279.87 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
57. U2af2 ENSMUSG00000030435 123.17 1279.87 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
58. Ywhab ENSMUSG00000018326 123.17 1279.87 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
59. Gm5805 ENSMUSG00000061848 121.50 1262.52 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
60. Ndufa12 ENSMUSG00000020022 121.50 1262.52 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
61. Ago2 ENSMUSG00000036698 116.51 1210.67 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
62. Rrm2 ENSMUSG00000020649 113.18 1176.07 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
63. Ybx1 ENSMUSG00000028639 113.18 1176.07 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
64. Rps20 ENSMUSG00000028234 111.51 1158.71 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
65. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 109.85 1141.46 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
66. Wbp5 109.85 1141.46 WW domain binding protein 5
67. Eef1b2 ENSMUSG00000025967 108.19 1124.21 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
68. Cox8a ENSMUSG00000035885 106.52 1106.86 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
69. Atp5g3 ENSMUSG00000018770 104.86 1089.61 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
70. Lamp1 ENSMUSG00000031447 104.86 1089.61 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
71. Rps4x ENSMUSG00000031320 104.86 1089.61 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
72. Capn6 ENSMUSG00000067276 99.86 1037.66 calpain 6 [Source:MGI Symbol;Acc:MGI:1100850]
73. Malat1 ENSMUSG00000092341 98.20 1020.41 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
74. Rps26 ENSMUSG00000025362 98.20 1020.41 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
75. Son ENSMUSG00000022961 98.20 1020.41 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
76. Trim28 ENSMUSG00000005566 98.20 1020.41 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
77. Col3a1 ENSMUSG00000026043 96.53 1003.05 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
78. Igfbp4 ENSMUSG00000017493 96.53 1003.05 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
79. Fkbp1a ENSMUSG00000032966 93.21 968.56 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
80. Paics ENSMUSG00000029247 93.21 968.56 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
81. Plagl1 ENSMUSG00000019817 93.21 968.56 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
82. Rps3a1 ENSMUSG00000028081 93.21 968.56 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
83. Gm14303 ENSMUSG00000081344 89.88 933.95 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
84. Pabpc1 ENSMUSG00000022283 89.88 933.95 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
85. Hsp90aa1 ENSMUSG00000021270 88.21 916.60 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
86. Meg3 ENSMUSG00000021268 88.21 916.60 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
87. Rplp1 ENSMUSG00000007892 88.21 916.60 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
88. Hmgn1 ENSMUSG00000040681 86.55 899.35 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
89. Anp32b ENSMUSG00000028333 83.22 864.75 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
90. Dact1 ENSMUSG00000044548 81.56 847.50 dishevelled-binding antagonist of beta-catenin 1 [Source:MGI Symbol;Acc:MGI:1891740]
91. Hnrnpa2b1 ENSMUSG00000004980 81.56 847.50 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
92. Tecr ENSMUSG00000031708 81.56 847.50 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
93. Gpc3 ENSMUSG00000055653 79.89 830.15 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
94. Sparc ENSMUSG00000018593 79.89 830.15 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
95. Ywhae ENSMUSG00000020849 79.89 830.15 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
96. Tpm4 ENSMUSG00000031799 78.23 812.90 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
97. Tsc22d1 ENSMUSG00000022010 78.23 812.90 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
98. 2810417H13Rik 76.56 795.54 RIKEN cDNA 2810417H13 gene
99. Col1a2 ENSMUSG00000029661 76.56 795.54 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
100. Scd2 ENSMUSG00000025203 76.56 795.54 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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