Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s57.

Sample reads: 96,254. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3873.92 40246.92 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3567.97 37068.35 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Rnr2 ENSMUSG00000064339 3323.22 34525.59 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
4. mt-Nd4 ENSMUSG00000064363 2436.67 25315.05 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Atp6 ENSMUSG00000064357 1968.91 20455.40 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. mt-Co2 ENSMUSG00000064354 1928.12 20031.62 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Nd1 ENSMUSG00000064341 1703.76 17700.70 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
8. mt-Nd2 ENSMUSG00000064345 1085.08 11273.11 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 954.54 9916.91 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. Gm10800 ENSMUSG00000075014 938.23 9747.46 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
11. Mdk ENSMUSG00000027239 866.16 8998.71 midkine [Source:MGI Symbol;Acc:MGI:96949]
12. mt-Nd5 ENSMUSG00000064367 814.49 8461.90 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
13. mt-Nd3 ENSMUSG00000064360 715.23 7430.67 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Actb ENSMUSG00000029580 641.80 6667.79 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. mt-Co3 ENSMUSG00000064358 587.41 6102.72 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. Igf2 ENSMUSG00000048583 569.73 5919.04 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. H19 ENSMUSG00000000031 545.26 5664.81 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
18. Hbb-y ENSMUSG00000052187 467.75 4859.55 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
19. Hmga2 ENSMUSG00000056758 452.80 4704.23 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
20. Eef1a1 ENSMUSG00000037742 413.36 4294.48 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
21. Gm13340 ENSMUSG00000083563 349.45 3630.51 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
22. Hba-a1 ENSMUSG00000069919 334.50 3475.19 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
23. Nedd4 ENSMUSG00000032216 246.11 2556.89 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
24. Npm1 ENSMUSG00000057113 244.75 2542.76 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
25. Rpsa ENSMUSG00000032518 240.68 2500.47 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
26. Hba-x ENSMUSG00000055609 239.32 2486.34 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
27. Tubb5 ENSMUSG00000001525 229.80 2387.44 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
28. mt-Rnr1 ENSMUSG00000064337 224.36 2330.92 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
29. Tuba1b ENSMUSG00000023004 220.28 2288.53 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
30. Ubb ENSMUSG00000019505 220.28 2288.53 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Pkm ENSMUSG00000032294 212.12 2203.76 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
32. Pbx1 ENSMUSG00000052534 197.16 2048.33 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
33. Grb10 ENSMUSG00000020176 195.80 2034.20 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
34. Cfl1 ENSMUSG00000056201 194.44 2020.08 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
35. Hsp90ab1 ENSMUSG00000023944 190.36 1977.69 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
36. Hbb-bh1 ENSMUSG00000052217 174.05 1808.24 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
37. Peg3 ENSMUSG00000002265 172.69 1794.11 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
38. Cdkn1c ENSMUSG00000037664 168.61 1751.72 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
39. Banf1 ENSMUSG00000024844 165.89 1723.46 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
40. Tpt1 ENSMUSG00000060126 163.17 1695.21 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
41. Atp5g3 ENSMUSG00000018770 161.81 1681.08 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
42. Fkbp1a ENSMUSG00000032966 159.09 1652.82 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
43. Ngfrap1 157.73 1638.69 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
44. Hnrnpc ENSMUSG00000060373 152.29 1582.17 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
45. Myl6 ENSMUSG00000090841 150.93 1568.04 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
46. Rpl4 ENSMUSG00000032399 150.93 1568.04 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
47. Eif4g2 ENSMUSG00000005610 142.77 1483.27 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
48. Ywhab ENSMUSG00000018326 140.05 1455.01 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
49. Chchd2 ENSMUSG00000070493 134.61 1398.49 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
50. Rrm2 ENSMUSG00000020649 134.61 1398.49 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
51. Rps26 ENSMUSG00000025362 131.90 1370.34 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
52. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 130.54 1356.21 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
53. Sfrp1 ENSMUSG00000031548 130.54 1356.21 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
54. U2af2 ENSMUSG00000030435 130.54 1356.21 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
55. Rpl23 ENSMUSG00000071415 129.18 1342.08 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
56. Malat1 ENSMUSG00000092341 127.82 1327.95 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
57. Eef1b2 ENSMUSG00000025967 126.46 1313.82 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
58. Hba-a2 ENSMUSG00000069917 123.74 1285.56 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
59. Gm17132 ENSMUSG00000061331 118.30 1229.04 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
60. Wbp5 118.30 1229.04 WW domain binding protein 5
61. Ybx1 ENSMUSG00000028639 118.30 1229.04 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
62. Cdk4 ENSMUSG00000006728 112.86 1172.52 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
63. Capn6 ENSMUSG00000067276 110.14 1144.27 calpain 6 [Source:MGI Symbol;Acc:MGI:1100850]
64. Set ENSMUSG00000054766 110.14 1144.27 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
65. Eif5a ENSMUSG00000078812 106.06 1101.88 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
66. Rps20 ENSMUSG00000028234 106.06 1101.88 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
67. Flrt3 ENSMUSG00000051379 103.34 1073.62 fibronectin leucine rich transmembrane protein 3 [Source:MGI Symbol;Acc:MGI:1918686]
68. Igfbp4 ENSMUSG00000017493 101.98 1059.49 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
69. Dact1 ENSMUSG00000044548 100.62 1045.36 dishevelled-binding antagonist of beta-catenin 1 [Source:MGI Symbol;Acc:MGI:1891740]
70. Pabpc1 ENSMUSG00000022283 100.62 1045.36 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
71. Sub1 ENSMUSG00000022205 100.62 1045.36 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
72. Pcbp1 ENSMUSG00000051695 99.26 1031.23 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
73. Ago2 ENSMUSG00000036698 97.90 1017.10 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
74. Col3a1 ENSMUSG00000026043 97.90 1017.10 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
75. Hmgn1 ENSMUSG00000040681 96.54 1002.97 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
76. Meg3 ENSMUSG00000021268 96.54 1002.97 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
77. Ndufa12 ENSMUSG00000020022 96.54 1002.97 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
78. Ran ENSMUSG00000029430 96.54 1002.97 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
79. Cox8a ENSMUSG00000035885 95.18 988.84 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
80. Lbh ENSMUSG00000024063 93.82 974.71 limb-bud and heart [Source:MGI Symbol;Acc:MGI:1925139]
81. Gm5805 ENSMUSG00000061848 91.10 946.46 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
82. Paics ENSMUSG00000029247 91.10 946.46 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
83. Col1a2 ENSMUSG00000029661 89.74 932.33 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
84. Gpc3 ENSMUSG00000055653 89.74 932.33 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
85. Igfbp5 ENSMUSG00000026185 87.02 904.07 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
86. Tecr ENSMUSG00000031708 85.66 889.94 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
87. Plagl1 ENSMUSG00000019817 84.30 875.81 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
88. Rpl18a ENSMUSG00000045128 84.30 875.81 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
89. Rps5 ENSMUSG00000012848 84.30 875.81 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
90. Tmpo ENSMUSG00000019961 84.30 875.81 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
91. Hsp90aa1 ENSMUSG00000021270 82.94 861.68 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
92. Oaz1 ENSMUSG00000035242 82.94 861.68 ornithine decarboxylase antizyme 1 [Source:MGI Symbol;Acc:MGI:109433]
93. Trim28 ENSMUSG00000005566 82.94 861.68 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
94. Anp32b ENSMUSG00000028333 81.58 847.55 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
95. F2r ENSMUSG00000048376 81.58 847.55 coagulation factor II (thrombin) receptor [Source:MGI Symbol;Acc:MGI:101802]
96. Ddx5 ENSMUSG00000020719 80.23 833.53 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
97. Scd2 ENSMUSG00000025203 80.23 833.53 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
98. Lamp1 ENSMUSG00000031447 78.87 819.40 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
99. Jund ENSMUSG00000071076, ENSMUSG00000110974 77.51 805.27 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
100. Son ENSMUSG00000022961 77.51 805.27 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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