Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s56.

Sample reads: 96,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4922.09 51144.93 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3554.58 36935.28 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Rnr2 ENSMUSG00000064339 2983.37 30999.89 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
4. mt-Nd4 ENSMUSG00000064363 2792.44 29015.96 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2228.99 23161.21 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 2003.92 20822.53 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Atp6 ENSMUSG00000064357 1889.05 19628.92 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
8. mt-Nd5 ENSMUSG00000064367 1708.99 17757.94 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
9. mt-Nd2 ENSMUSG00000064345 1106.73 11499.92 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. Gm10800 ENSMUSG00000075014 1026.02 10661.27 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
11. mt-Co1 ENSMUSG00000064351 948.41 9854.83 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
12. mt-Nd3 ENSMUSG00000064360 841.30 8741.86 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Mdk ENSMUSG00000027239 831.99 8645.12 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. Actb ENSMUSG00000029580 748.17 7774.16 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. H19 ENSMUSG00000000031 602.26 6258.02 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
16. mt-Co3 ENSMUSG00000064358 538.62 5596.75 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
17. Hbb-y ENSMUSG00000052187 476.53 4951.57 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
18. Igf2 ENSMUSG00000048583 426.86 4435.46 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
19. Hmga2 ENSMUSG00000056758 409.79 4258.09 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
20. Eef1a1 ENSMUSG00000037742 369.43 3838.71 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
21. Gm13340 ENSMUSG00000083563 346.14 3596.71 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
22. Npm1 ENSMUSG00000057113 285.61 2967.74 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Hba-a1 ENSMUSG00000069919 271.64 2822.58 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
24. Peg3 ENSMUSG00000002265 231.28 2403.21 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
25. Tubb5 ENSMUSG00000001525 231.28 2403.21 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. mt-Rnr1 ENSMUSG00000064337 231.28 2403.21 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
27. Cfl1 ENSMUSG00000056201 228.18 2370.99 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
28. Tuba1b ENSMUSG00000023004 228.18 2370.99 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
29. Pkm ENSMUSG00000032294 221.97 2306.47 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
30. Ubb ENSMUSG00000019505 208.00 2161.31 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Myl6 ENSMUSG00000090841 204.89 2128.99 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
32. Nedd4 ENSMUSG00000032216 203.34 2112.89 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
33. Rpsa ENSMUSG00000032518 198.68 2064.46 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
34. Grb10 ENSMUSG00000020176 195.58 2032.25 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
35. Hba-x ENSMUSG00000055609 190.92 1983.83 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
36. Gm17132 ENSMUSG00000061331 187.82 1951.62 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
37. Cdkn1c ENSMUSG00000037664 184.71 1919.30 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
38. Hbb-bh1 ENSMUSG00000052217 167.64 1741.93 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
39. Hsp90ab1 ENSMUSG00000023944 164.54 1709.72 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
40. Tpt1 ENSMUSG00000060126 161.43 1677.40 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
41. Ngfrap1 144.36 1500.03 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
42. Rps20 ENSMUSG00000028234 142.80 1483.82 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
43. Hnrnpc ENSMUSG00000060373 139.70 1451.61 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
44. Pbx1 ENSMUSG00000052534 139.70 1451.61 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
45. Chchd2 ENSMUSG00000070493 138.15 1435.50 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
46. Meg3 ENSMUSG00000021268 135.04 1403.19 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
47. Ywhab ENSMUSG00000018326 133.49 1387.08 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
48. Banf1 ENSMUSG00000024844 131.94 1370.97 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
49. Rpl23 ENSMUSG00000071415 128.83 1338.66 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
50. Eif4g2 ENSMUSG00000005610 125.73 1306.45 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
51. Sfrp1 ENSMUSG00000031548 125.73 1306.45 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
52. Wbp5 124.18 1290.34 WW domain binding protein 5
53. Rpl18a ENSMUSG00000045128 121.07 1258.03 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
54. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 121.07 1258.03 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
55. U2af2 ENSMUSG00000030435 119.52 1241.92 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
56. Pabpc1 ENSMUSG00000022283 116.42 1209.71 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
57. Fkbp1a ENSMUSG00000032966 113.31 1177.39 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
58. Rpl4 ENSMUSG00000032399 113.31 1177.39 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
59. Rps26 ENSMUSG00000025362 113.31 1177.39 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
60. Cdk4 ENSMUSG00000006728 110.21 1145.18 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
61. Eif5a ENSMUSG00000078812 110.21 1145.18 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
62. Gm5805 ENSMUSG00000061848 110.21 1145.18 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
63. Ybx1 ENSMUSG00000028639 104.00 1080.65 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
64. Set ENSMUSG00000054766 102.45 1064.55 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
65. Sub1 ENSMUSG00000022205 100.89 1048.34 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
66. Pcbp1 ENSMUSG00000051695 99.34 1032.23 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
67. Atp5g3 ENSMUSG00000018770 97.79 1016.13 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
68. Capn6 ENSMUSG00000067276 96.24 1000.02 calpain 6 [Source:MGI Symbol;Acc:MGI:1100850]
69. Col1a2 ENSMUSG00000029661 96.24 1000.02 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
70. Dact1 ENSMUSG00000044548 96.24 1000.02 dishevelled-binding antagonist of beta-catenin 1 [Source:MGI Symbol;Acc:MGI:1891740]
71. Anp32b ENSMUSG00000028333 94.69 983.91 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
72. Hba-a2 ENSMUSG00000069917 94.69 983.91 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
73. Ndufa12 ENSMUSG00000020022 94.69 983.91 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
74. Cox8a ENSMUSG00000035885 93.13 967.70 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
75. Malat1 ENSMUSG00000092341 93.13 967.70 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
76. Plagl1 ENSMUSG00000019817 93.13 967.70 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
77. Igfbp4 ENSMUSG00000017493 91.58 951.60 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
78. Rrm2 ENSMUSG00000020649 90.03 935.49 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
79. Rplp1 ENSMUSG00000007892 88.48 919.39 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
80. Tecr ENSMUSG00000031708 88.48 919.39 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
81. Ywhae ENSMUSG00000020849 88.48 919.39 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
82. Ago2 ENSMUSG00000036698 86.92 903.18 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
83. Arpc2 ENSMUSG00000006304 86.92 903.18 actin related protein 2/3 complex, subunit 2 [Source:MGI Symbol;Acc:MGI:1923959]
84. Eef1b2 ENSMUSG00000025967 86.92 903.18 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
85. Gm21897 ENSMUSG00000094472 85.37 887.07 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
86. Capns1 ENSMUSG00000001794 83.82 870.97 calpain, small subunit 1 [Source:MGI Symbol;Acc:MGI:88266]
87. Hmgn1 ENSMUSG00000040681 83.82 870.97 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
88. Marcksl1 ENSMUSG00000047945 83.82 870.97 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
89. Rpl39-ps ENSMUSG00000036305 83.82 870.97 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
90. Cxcl12 ENSMUSG00000061353 80.72 838.75 chemokine (C-X-C motif) ligand 12 [Source:MGI Symbol;Acc:MGI:103556]
91. Rps4x ENSMUSG00000031320 80.72 838.75 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
92. Sparc ENSMUSG00000018593 80.72 838.75 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
93. Flrt3 ENSMUSG00000051379 79.16 822.54 fibronectin leucine rich transmembrane protein 3 [Source:MGI Symbol;Acc:MGI:1918686]
94. H3f3b ENSMUSG00000016559 79.16 822.54 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
95. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 79.16 822.54 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
96. Hsp90aa1 ENSMUSG00000021270 79.16 822.54 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
97. Ran ENSMUSG00000029430 79.16 822.54 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
98. Top2a ENSMUSG00000020914 79.16 822.54 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
99. Hnrnpa0 ENSMUSG00000007836 77.61 806.44 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
100. Paics ENSMUSG00000029247 77.61 806.44 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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