Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s55.

Sample reads: 96,259. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3860.89 40110.18 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Rnr2 ENSMUSG00000064339 3720.98 38656.67 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
3. mt-Cytb ENSMUSG00000064370 3371.21 35022.97 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Nd4 ENSMUSG00000064363 2798.18 29069.85 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. Gm10800 ENSMUSG00000075014 2268.31 23565.11 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
6. mt-Co2 ENSMUSG00000064354 1915.56 19900.45 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Nd1 ENSMUSG00000064341 1817.33 18879.95 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
8. mt-Atp6 ENSMUSG00000064357 1698.26 17642.95 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
9. mt-Nd5 ENSMUSG00000064367 1278.53 13282.45 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
10. mt-Nd2 ENSMUSG00000064345 1003.18 10421.88 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. Mdk ENSMUSG00000027239 878.15 9122.96 midkine [Source:MGI Symbol;Acc:MGI:96949]
12. mt-Co1 ENSMUSG00000064351 846.90 8798.31 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
13. mt-Nd3 ENSMUSG00000064360 669.78 6958.24 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Actb ENSMUSG00000029580 645.96 6710.78 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. Hmga2 ENSMUSG00000056758 573.03 5953.12 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
16. H19 ENSMUSG00000000031 517.96 5381.00 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
17. mt-Co3 ENSMUSG00000064358 509.03 5288.23 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
18. Igf2 ENSMUSG00000048583 443.54 4607.87 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
19. mt-Rnr1 ENSMUSG00000064337 389.96 4051.23 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
20. Eef1a1 ENSMUSG00000037742 382.52 3973.94 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
21. Gm17132 ENSMUSG00000061331 354.24 3680.14 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
22. Gm13340 ENSMUSG00000083563 345.31 3587.37 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
23. Peg3 ENSMUSG00000002265 281.31 2922.49 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
24. Hbb-y ENSMUSG00000052187 279.82 2907.01 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
25. Nedd4 ENSMUSG00000032216 232.19 2412.19 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
26. Npm1 ENSMUSG00000057113 232.19 2412.19 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
27. Cfl1 ENSMUSG00000056201 203.91 2118.39 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
28. Pbx1 ENSMUSG00000052534 202.42 2102.91 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
29. Grb10 ENSMUSG00000020176 192.00 1994.66 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
30. Gm21897 ENSMUSG00000094472 183.07 1901.89 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
31. Tuba1b ENSMUSG00000023004 181.58 1886.41 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
32. Tubb5 ENSMUSG00000001525 181.58 1886.41 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
33. Ubb ENSMUSG00000019505 181.58 1886.41 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
34. Rpsa ENSMUSG00000032518 180.10 1871.03 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
35. Eif4g2 ENSMUSG00000005610 178.61 1855.55 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
36. Hba-a1 ENSMUSG00000069919 175.63 1824.59 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
37. Set ENSMUSG00000054766 174.14 1809.11 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
38. Hsp90ab1 ENSMUSG00000023944 166.70 1731.82 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
39. Ngfrap1 156.28 1623.57 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
40. Pkm ENSMUSG00000032294 154.79 1608.09 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
41. Myl6 ENSMUSG00000090841 144.37 1499.84 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
42. Hbb-bh1 ENSMUSG00000052217 138.42 1438.02 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
43. Malat1 ENSMUSG00000092341 138.42 1438.02 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
44. Rrm2 ENSMUSG00000020649 136.93 1422.54 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
45. Banf1 ENSMUSG00000024844 135.44 1407.06 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
46. Rpl4 ENSMUSG00000032399 135.44 1407.06 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
47. Hba-x ENSMUSG00000055609 133.96 1391.69 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
48. Sfrp1 ENSMUSG00000031548 133.96 1391.69 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
49. Gm26905 ENSMUSG00000097695 132.47 1376.21 predicted gene, 26905 [Source:MGI Symbol;Acc:MGI:5477399]
50. Hnrnpc ENSMUSG00000060373 125.03 1298.92 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
51. Rpl18a ENSMUSG00000045128 125.03 1298.92 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
52. Rpl23 ENSMUSG00000071415 125.03 1298.92 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
53. Ywhab ENSMUSG00000018326 125.03 1298.92 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
54. Tpt1 ENSMUSG00000060126 123.54 1283.44 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
55. Ybx1 ENSMUSG00000028639 123.54 1283.44 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
56. Cdkn1c ENSMUSG00000037664 120.56 1252.48 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
57. Wbp5 119.07 1237.00 WW domain binding protein 5
58. Meg3 ENSMUSG00000021268 117.58 1221.52 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
59. Eef1b2 ENSMUSG00000025967 116.09 1206.04 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
60. Ago2 ENSMUSG00000036698 114.61 1190.67 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
61. Capn6 ENSMUSG00000067276 114.61 1190.67 calpain 6 [Source:MGI Symbol;Acc:MGI:1100850]
62. Col1a1 ENSMUSG00000001506 114.61 1190.67 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
63. Fkbp1a ENSMUSG00000032966 114.61 1190.67 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
64. Trim28 ENSMUSG00000005566 108.65 1128.75 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
65. Gm13936 ENSMUSG00000085444 107.16 1113.27 predicted gene 13936 [Source:MGI Symbol;Acc:MGI:3651878]
66. Atp5g3 ENSMUSG00000018770 105.68 1097.89 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
67. Col3a1 ENSMUSG00000026043 105.68 1097.89 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
68. Hba-a2 ENSMUSG00000069917 105.68 1097.89 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
69. Paics ENSMUSG00000029247 105.68 1097.89 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
70. Gpc3 ENSMUSG00000055653 102.70 1066.93 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
71. Kpnb1 ENSMUSG00000001440 101.21 1051.45 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
72. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 98.23 1020.50 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
73. Col1a2 ENSMUSG00000029661 96.75 1005.12 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
74. Igfbp4 ENSMUSG00000017493 96.75 1005.12 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
75. Tsc22d1 ENSMUSG00000022010 92.28 958.68 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
76. Hsp90aa1 ENSMUSG00000021270 90.79 943.20 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
77. Pabpc1 ENSMUSG00000022283 90.79 943.20 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
78. Gm5805 ENSMUSG00000061848 89.30 927.72 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
79. Chchd2 ENSMUSG00000070493 87.82 912.35 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
80. Eif5a ENSMUSG00000078812 87.82 912.35 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
81. Gm17131 ENSMUSG00000085328 86.33 896.87 predicted gene 17131 [Source:MGI Symbol;Acc:MGI:4937958]
82. Rps26 ENSMUSG00000025362 86.33 896.87 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
83. F2r ENSMUSG00000048376 84.84 881.39 coagulation factor II (thrombin) receptor [Source:MGI Symbol;Acc:MGI:101802]
84. Rps20 ENSMUSG00000028234 83.35 865.91 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
85. Ssbp3 ENSMUSG00000061887 83.35 865.91 single-stranded DNA binding protein 3 [Source:MGI Symbol;Acc:MGI:1919725]
86. U2af2 ENSMUSG00000030435 83.35 865.91 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
87. Dact1 ENSMUSG00000044548 81.86 850.43 dishevelled-binding antagonist of beta-catenin 1 [Source:MGI Symbol;Acc:MGI:1891740]
88. Igf2r ENSMUSG00000023830 81.86 850.43 insulin-like growth factor 2 receptor [Source:MGI Symbol;Acc:MGI:96435]
89. Ldha ENSMUSG00000063229 81.86 850.43 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
90. Cdk4 ENSMUSG00000006728 80.37 834.95 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
91. Cox8a ENSMUSG00000035885 80.37 834.95 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
92. Flrt3 ENSMUSG00000051379 80.37 834.95 fibronectin leucine rich transmembrane protein 3 [Source:MGI Symbol;Acc:MGI:1918686]
93. Gm10717 ENSMUSG00000095891 80.37 834.95 predicted gene 10717 [Source:MGI Symbol;Acc:MGI:3642031]
94. Hnrnpa2b1 ENSMUSG00000004980 80.37 834.95 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
95. Sub1 ENSMUSG00000022205 80.37 834.95 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
96. Tecr ENSMUSG00000031708 80.37 834.95 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
97. Scd2 ENSMUSG00000025203 78.88 819.47 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
98. Ywhae ENSMUSG00000020849 78.88 819.47 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
99. 2810417H13Rik 77.40 804.10 RIKEN cDNA 2810417H13 gene
100. Nr2f2 ENSMUSG00000030551 77.40 804.10 nuclear receptor subfamily 2, group F, member 2 [Source:MGI Symbol;Acc:MGI:1352452]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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