Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s54.

Sample reads: 96,249. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4183.07 43460.87 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Rnr2 ENSMUSG00000064339 3636.11 37778.12 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
3. mt-Cytb ENSMUSG00000064370 3543.43 36815.20 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Nd4 ENSMUSG00000064363 2780.23 28885.78 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2206.01 22919.80 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Atp6 ENSMUSG00000064357 1978.87 20559.88 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Co2 ENSMUSG00000064354 1958.88 20352.19 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Nd5 ENSMUSG00000064367 1866.21 19389.38 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
9. mt-Nd2 ENSMUSG00000064345 1113.91 11573.20 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Co1 ENSMUSG00000064351 1030.32 10704.72 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. mt-Nd3 ENSMUSG00000064360 846.79 8797.90 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. Mdk ENSMUSG00000027239 772.29 8023.87 midkine [Source:MGI Symbol;Acc:MGI:96949]
13. Actb ENSMUSG00000029580 717.77 7457.42 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Gm10800 ENSMUSG00000075014 672.34 6985.42 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
15. Igf2 ENSMUSG00000048583 581.49 6041.51 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
16. mt-Co3 ENSMUSG00000064358 536.06 5569.51 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
17. H19 ENSMUSG00000000031 476.09 4946.44 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
18. Hmga2 ENSMUSG00000056758 441.57 4587.78 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
19. Gm13340 ENSMUSG00000083563 392.50 4077.96 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. mt-Rnr1 ENSMUSG00000064337 363.43 3775.93 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
21. Eef1a1 ENSMUSG00000037742 336.17 3492.71 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
22. Nedd4 ENSMUSG00000032216 283.47 2945.17 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
23. Npm1 ENSMUSG00000057113 276.21 2869.74 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Peg3 ENSMUSG00000002265 250.77 2605.43 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
25. Rpsa ENSMUSG00000032518 216.24 2246.67 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
26. Tuba1b ENSMUSG00000023004 216.24 2246.67 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
27. Pbx1 ENSMUSG00000052534 212.61 2208.96 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
28. Cfl1 ENSMUSG00000056201 203.52 2114.51 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
29. Tubb5 ENSMUSG00000001525 203.52 2114.51 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
30. Ubb ENSMUSG00000019505 196.25 2038.98 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Hsp90ab1 ENSMUSG00000023944 192.62 2001.27 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
32. Grb10 ENSMUSG00000020176 190.80 1982.36 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
33. Hnrnpc ENSMUSG00000060373 179.90 1869.11 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
34. Hbb-y ENSMUSG00000052187 174.45 1812.48 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
35. Pkm ENSMUSG00000032294 174.45 1812.48 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
36. Myl6 ENSMUSG00000090841 170.81 1774.67 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
37. Tpt1 ENSMUSG00000060126 167.18 1736.95 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
38. Eif4g2 ENSMUSG00000005610 159.91 1661.42 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
39. Banf1 ENSMUSG00000024844 149.01 1548.17 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
40. Ngfrap1 149.01 1548.17 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
41. Set ENSMUSG00000054766 149.01 1548.17 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
42. U2af2 ENSMUSG00000030435 145.37 1510.35 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
43. Eif5a ENSMUSG00000078812 141.74 1472.64 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
44. Rps20 ENSMUSG00000028234 141.74 1472.64 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
45. Hba-a1 ENSMUSG00000069919 139.92 1453.73 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
46. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 139.92 1453.73 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
47. Rpl4 ENSMUSG00000032399 138.10 1434.82 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
48. Eef1b2 ENSMUSG00000025967 134.47 1397.10 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
49. Gm17132 ENSMUSG00000061331 134.47 1397.10 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
50. Fkbp1a ENSMUSG00000032966 132.65 1378.19 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
51. Chchd2 ENSMUSG00000070493 129.02 1340.48 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
52. Ybx1 ENSMUSG00000028639 129.02 1340.48 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
53. Ywhab ENSMUSG00000018326 129.02 1340.48 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
54. Atp5g3 ENSMUSG00000018770 125.38 1302.66 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
55. Col1a2 ENSMUSG00000029661 123.57 1283.86 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
56. Meg3 ENSMUSG00000021268 121.75 1264.95 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
57. Paics ENSMUSG00000029247 119.93 1246.04 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
58. Rps26 ENSMUSG00000025362 116.30 1208.32 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
59. Wbp5 116.30 1208.32 WW domain binding protein 5
60. Ndufa12 ENSMUSG00000020022 114.48 1189.41 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
61. Cdkn1c ENSMUSG00000037664 112.66 1170.50 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
62. Igfbp4 ENSMUSG00000017493 112.66 1170.50 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
63. Hba-x ENSMUSG00000055609 107.21 1113.88 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
64. Hsp90aa1 ENSMUSG00000021270 103.58 1076.17 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
65. Pcbp1 ENSMUSG00000051695 103.58 1076.17 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
66. Rrm2 ENSMUSG00000020649 101.76 1057.26 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
67. Rpl23 ENSMUSG00000071415 99.94 1038.35 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
68. Sfrp1 ENSMUSG00000031548 99.94 1038.35 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
69. Col3a1 ENSMUSG00000026043 98.13 1019.54 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
70. Gpc3 ENSMUSG00000055653 96.31 1000.63 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
71. Dact1 ENSMUSG00000044548 94.49 981.72 dishevelled-binding antagonist of beta-catenin 1 [Source:MGI Symbol;Acc:MGI:1891740]
72. Rpl18a ENSMUSG00000045128 94.49 981.72 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
73. Capn6 ENSMUSG00000067276 90.86 944.01 calpain 6 [Source:MGI Symbol;Acc:MGI:1100850]
74. Cox8a ENSMUSG00000035885 90.86 944.01 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
75. Gm5805 ENSMUSG00000061848 90.86 944.01 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
76. Hmgn1 ENSMUSG00000040681 90.86 944.01 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
77. Pabpc1 ENSMUSG00000022283 90.86 944.01 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
78. Anp32b ENSMUSG00000028333 89.04 925.10 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
79. Cxcl12 ENSMUSG00000061353 89.04 925.10 chemokine (C-X-C motif) ligand 12 [Source:MGI Symbol;Acc:MGI:103556]
80. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 89.04 925.10 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
81. Sub1 ENSMUSG00000022205 87.22 906.19 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
82. Cdk4 ENSMUSG00000006728 85.41 887.38 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
83. Top2a ENSMUSG00000020914 85.41 887.38 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
84. Trim28 ENSMUSG00000005566 85.41 887.38 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
85. Ago2 ENSMUSG00000036698 83.59 868.48 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
86. Col1a1 ENSMUSG00000001506 83.59 868.48 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
87. Lamp1 ENSMUSG00000031447 83.59 868.48 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
88. Lbh ENSMUSG00000024063 83.59 868.48 limb-bud and heart [Source:MGI Symbol;Acc:MGI:1925139]
89. Dlk1 ENSMUSG00000040856, ENSMUSG00000098411 79.95 830.66 delta like non-canonical Notch ligand 1 [Source:MGI Symbol;Acc:MGI:94900]
90. Fscn1 ENSMUSG00000029581 79.95 830.66 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
91. Malat1 ENSMUSG00000092341 79.95 830.66 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
92. 2810417H13Rik 78.14 811.85 RIKEN cDNA 2810417H13 gene
93. Gm14303 ENSMUSG00000081344 78.14 811.85 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
94. Tuba1a ENSMUSG00000072235 78.14 811.85 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
95. Atxn7l3b ENSMUSG00000074748 76.32 792.94 ataxin 7-like 3B [Source:MGI Symbol;Acc:MGI:1914971]
96. H3f3b ENSMUSG00000016559 76.32 792.94 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
97. Hbb-bh1 ENSMUSG00000052217 76.32 792.94 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
98. Hspe1 ENSMUSG00000073676 76.32 792.94 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
99. Pfn1 ENSMUSG00000018293 76.32 792.94 profilin 1 [Source:MGI Symbol;Acc:MGI:97549]
100. Rpl32 ENSMUSG00000057841 76.32 792.94 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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