Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s53.

Sample reads: 96,256. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4458.45 46319.59 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 4323.25 44914.97 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Nd4 ENSMUSG00000064363 3129.52 32513.11 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Rnr2 ENSMUSG00000064339 3063.46 31826.80 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
5. mt-Nd1 ENSMUSG00000064341 2501.16 25984.97 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 2216.93 23032.06 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Atp6 ENSMUSG00000064357 2192.35 22776.69 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
8. mt-Nd2 ENSMUSG00000064345 1287.45 13375.53 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Nd5 ENSMUSG00000064367 1212.17 12593.44 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
10. mt-Co1 ENSMUSG00000064351 1052.39 10933.46 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. Mdk ENSMUSG00000027239 909.51 9449.05 midkine [Source:MGI Symbol;Acc:MGI:96949]
12. mt-Nd3 ENSMUSG00000064360 837.30 8698.85 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. mt-Co3 ENSMUSG00000064358 794.29 8252.01 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
14. Actb ENSMUSG00000029580 669.84 6959.08 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. H19 ENSMUSG00000000031 537.72 5586.46 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
16. Hmga2 ENSMUSG00000056758 528.50 5490.68 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
17. Gm13340 ENSMUSG00000083563 467.05 4852.26 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Igf2 ENSMUSG00000048583 462.44 4804.37 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
19. Hbb-y ENSMUSG00000052187 387.16 4022.27 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
20. Gm10800 ENSMUSG00000075014 359.50 3734.91 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
21. Eef1a1 ENSMUSG00000037742 330.31 3431.65 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
22. Peg3 ENSMUSG00000002265 282.69 2936.91 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
23. Tuba1b ENSMUSG00000023004 279.61 2904.92 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. mt-Rnr1 ENSMUSG00000064337 259.64 2697.44 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
25. Pkm ENSMUSG00000032294 250.42 2601.66 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
26. Tubb5 ENSMUSG00000001525 235.06 2442.08 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
27. Npm1 ENSMUSG00000057113 233.52 2426.08 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
28. Rpsa ENSMUSG00000032518 227.38 2362.29 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
29. Pbx1 ENSMUSG00000052534 225.84 2346.29 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
30. Cfl1 ENSMUSG00000056201 219.70 2282.50 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
31. Hsp90ab1 ENSMUSG00000023944 218.16 2266.50 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
32. Nedd4 ENSMUSG00000032216 201.26 2090.92 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
33. Grb10 ENSMUSG00000020176 198.19 2059.03 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
34. Hba-a1 ENSMUSG00000069919 190.51 1979.24 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
35. Hba-x ENSMUSG00000055609 185.90 1931.35 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
36. Ubb ENSMUSG00000019505 184.36 1915.35 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
37. Myl6 ENSMUSG00000090841 173.61 1803.66 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
38. Tpt1 ENSMUSG00000060126 153.63 1596.09 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
39. Hnrnpc ENSMUSG00000060373 152.10 1580.19 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
40. Sfrp1 ENSMUSG00000031548 152.10 1580.19 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
41. Banf1 ENSMUSG00000024844 142.88 1484.40 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
42. Ngfrap1 141.34 1468.40 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
43. Atp5g3 ENSMUSG00000018770 139.81 1452.51 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
44. Rpl4 ENSMUSG00000032399 138.27 1436.51 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
45. Col1a2 ENSMUSG00000029661 130.59 1356.72 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
46. Eef1b2 ENSMUSG00000025967 127.52 1324.83 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
47. Eif4g2 ENSMUSG00000005610 127.52 1324.83 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
48. Ywhab ENSMUSG00000018326 127.52 1324.83 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
49. Rpl18a ENSMUSG00000045128 122.91 1276.93 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
50. Cdkn1c ENSMUSG00000037664 121.37 1260.93 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
51. Chchd2 ENSMUSG00000070493 121.37 1260.93 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
52. Eif5a ENSMUSG00000078812 121.37 1260.93 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
53. U2af2 ENSMUSG00000030435 118.30 1229.04 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
54. Gm17132 ENSMUSG00000061331 116.76 1213.04 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
55. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 116.76 1213.04 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
56. Anp32b ENSMUSG00000028333 113.69 1181.14 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
57. Rpl23 ENSMUSG00000071415 113.69 1181.14 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
58. Fkbp1a ENSMUSG00000032966 112.15 1165.15 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
59. Igfbp4 ENSMUSG00000017493 112.15 1165.15 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
60. Rps26 ENSMUSG00000025362 110.62 1149.25 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
61. Ybx1 ENSMUSG00000028639 110.62 1149.25 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
62. Ago2 ENSMUSG00000036698 107.54 1117.25 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
63. Col1a1 ENSMUSG00000001506 107.54 1117.25 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
64. Ndufa12 ENSMUSG00000020022 107.54 1117.25 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
65. Cdk4 ENSMUSG00000006728 101.40 1053.46 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
66. Trim28 ENSMUSG00000005566 101.40 1053.46 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
67. Rps20 ENSMUSG00000028234 99.86 1037.46 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
68. Set ENSMUSG00000054766 99.86 1037.46 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
69. Paics ENSMUSG00000029247 96.79 1005.57 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
70. Rrm2 ENSMUSG00000020649 96.79 1005.57 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
71. Hbb-bh1 ENSMUSG00000052217 95.25 989.57 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
72. Hsp90aa1 ENSMUSG00000021270 95.25 989.57 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
73. Wbp5 95.25 989.57 WW domain binding protein 5
74. Gm5805 ENSMUSG00000061848 93.72 973.67 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
75. Hmgn1 ENSMUSG00000040681 93.72 973.67 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
76. Ran ENSMUSG00000029430 93.72 973.67 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
77. Pabpc1 ENSMUSG00000022283 92.18 957.67 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
78. Lamp1 ENSMUSG00000031447 90.64 941.67 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
79. Tecr ENSMUSG00000031708 90.64 941.67 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
80. Hba-a2 ENSMUSG00000069917 89.11 925.78 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
81. Malat1 ENSMUSG00000092341 89.11 925.78 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
82. Col3a1 ENSMUSG00000026043 87.57 909.78 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
83. Cox8a ENSMUSG00000035885 87.57 909.78 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
84. Rps4x ENSMUSG00000031320 87.57 909.78 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
85. Rps5 ENSMUSG00000012848 87.57 909.78 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
86. Ssbp3 ENSMUSG00000061887 86.03 893.78 single-stranded DNA binding protein 3 [Source:MGI Symbol;Acc:MGI:1919725]
87. Pcbp1 ENSMUSG00000051695 84.50 877.88 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
88. Crabp1 ENSMUSG00000032291 81.43 845.99 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
89. Gpc3 ENSMUSG00000055653 81.43 845.99 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
90. Hnrnpa0 ENSMUSG00000007836 81.43 845.99 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
91. Hspe1 ENSMUSG00000073676 81.43 845.99 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
92. Caprin1 ENSMUSG00000027184 79.89 829.99 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
93. Marcks ENSMUSG00000069662 79.89 829.99 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
94. Tmpo ENSMUSG00000019961 79.89 829.99 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
95. Dact1 ENSMUSG00000044548 78.35 813.99 dishevelled-binding antagonist of beta-catenin 1 [Source:MGI Symbol;Acc:MGI:1891740]
96. Ddx39b ENSMUSG00000019432 76.82 798.10 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
97. Rps9 ENSMUSG00000006333 75.28 782.10 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
98. Ywhae ENSMUSG00000020849 75.28 782.10 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
99. Eef2 ENSMUSG00000034994 73.74 766.10 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
100. Meg3 ENSMUSG00000021268 73.74 766.10 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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