Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s52.

Sample reads: 96,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4661.89 48441.99 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Rnr2 ENSMUSG00000064339 3760.42 39074.76 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
3. mt-Cytb ENSMUSG00000064370 3706.04 38509.69 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
4. mt-Nd4 ENSMUSG00000064363 2828.90 29395.28 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2385.32 24786.01 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 1927.43 20028.05 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Atp6 ENSMUSG00000064357 1840.14 19121.01 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
8. Gm10800 ENSMUSG00000075014 1211.98 12593.76 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
9. mt-Nd5 ENSMUSG00000064367 1166.19 12117.95 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
10. mt-Nd2 ENSMUSG00000064345 1093.21 11359.61 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. mt-Co1 ENSMUSG00000064351 974.45 10125.57 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
12. mt-Nd3 ENSMUSG00000064360 857.11 8906.28 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Mdk ENSMUSG00000027239 738.35 7672.24 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. Actb ENSMUSG00000029580 685.40 7122.03 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. mt-Co3 ENSMUSG00000064358 658.22 6839.61 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. H19 ENSMUSG00000000031 582.38 6051.55 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
17. Igf2 ENSMUSG00000048583 556.62 5783.87 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. Hmga2 ENSMUSG00000056758 526.57 5471.62 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
19. Eef1a1 ENSMUSG00000037742 352.00 3657.65 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
20. Gm13340 ENSMUSG00000083563 339.12 3523.82 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. mt-Rnr1 ENSMUSG00000064337 337.69 3508.96 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
22. Hbb-y ENSMUSG00000052187 296.20 3077.83 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
23. Tuba1b ENSMUSG00000023004 279.03 2899.42 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Npm1 ENSMUSG00000057113 271.87 2825.02 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
25. Peg3 ENSMUSG00000002265 248.98 2587.17 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
26. Gm17132 ENSMUSG00000061331 237.53 2468.19 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
27. Tubb5 ENSMUSG00000001525 234.67 2438.47 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
28. Rpsa ENSMUSG00000032518 208.91 2170.80 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
29. Pbx1 ENSMUSG00000052534 204.62 2126.22 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
30. Nedd4 ENSMUSG00000032216 197.46 2051.82 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
31. Hba-x ENSMUSG00000055609 186.02 1932.95 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
32. Ubb ENSMUSG00000019505 180.29 1873.40 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
33. Set ENSMUSG00000054766 176.00 1828.83 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
34. Grb10 ENSMUSG00000020176 170.28 1769.39 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
35. Hba-a1 ENSMUSG00000069919 168.85 1754.53 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
36. Hsp90ab1 ENSMUSG00000023944 168.85 1754.53 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
37. Pkm ENSMUSG00000032294 167.42 1739.67 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
38. Tpt1 ENSMUSG00000060126 160.26 1665.27 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
39. Sfrp1 ENSMUSG00000031548 157.40 1635.55 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
40. Cfl1 ENSMUSG00000056201 155.97 1620.69 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
41. Myl6 ENSMUSG00000090841 155.97 1620.69 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
42. Rpl4 ENSMUSG00000032399 154.54 1605.83 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
43. Malat1 ENSMUSG00000092341 148.81 1546.29 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
44. Eif4g2 ENSMUSG00000005610 147.38 1531.43 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
45. Chchd2 ENSMUSG00000070493 145.95 1516.58 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
46. Col1a2 ENSMUSG00000029661 133.07 1382.74 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
47. Hnrnpc ENSMUSG00000060373 133.07 1382.74 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
48. Ybx1 ENSMUSG00000028639 130.21 1353.02 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
49. Rpl23 ENSMUSG00000071415 125.92 1308.44 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
50. Col1a1 ENSMUSG00000001506 124.49 1293.58 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
51. Eef1b2 ENSMUSG00000025967 120.20 1249.01 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
52. Ngfrap1 120.20 1249.01 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
53. Ywhab ENSMUSG00000018326 118.77 1234.15 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
54. Cdk4 ENSMUSG00000006728 115.90 1204.32 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
55. Meg3 ENSMUSG00000021268 113.04 1174.61 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
56. Ran ENSMUSG00000029430 111.61 1159.75 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
57. Atp5g3 ENSMUSG00000018770 110.18 1144.89 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
58. Eif5a ENSMUSG00000078812 110.18 1144.89 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
59. U2af2 ENSMUSG00000030435 107.32 1115.17 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
60. Hbb-bh1 ENSMUSG00000052217 104.46 1085.45 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
61. Wbp5 103.03 1070.59 WW domain binding protein 5
62. Gm14303 ENSMUSG00000081344 101.59 1055.63 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
63. Lamp1 ENSMUSG00000031447 101.59 1055.63 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
64. Banf1 ENSMUSG00000024844 100.16 1040.77 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
65. Rpl18a ENSMUSG00000045128 100.16 1040.77 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
66. Rps26 ENSMUSG00000025362 98.73 1025.91 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
67. Ago2 ENSMUSG00000036698 97.30 1011.05 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
68. Anp32b ENSMUSG00000028333 95.87 996.19 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
69. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 95.87 996.19 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
70. Marcks ENSMUSG00000069662 94.44 981.33 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
71. Paics ENSMUSG00000029247 94.44 981.33 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
72. Cox8a ENSMUSG00000035885 93.01 966.47 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
73. Gpc3 ENSMUSG00000055653 91.58 951.61 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
74. Igfbp4 ENSMUSG00000017493 91.58 951.61 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
75. Col3a1 ENSMUSG00000026043 90.15 936.75 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
76. Pabpc1 ENSMUSG00000022283 90.15 936.75 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
77. Fkbp1a ENSMUSG00000032966 87.29 907.04 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
78. Hnrnpa0 ENSMUSG00000007836 84.42 877.21 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
79. Hsp90aa1 ENSMUSG00000021270 84.42 877.21 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
80. Rps4x ENSMUSG00000031320 84.42 877.21 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
81. Gm21897 ENSMUSG00000094472 82.99 862.35 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
82. Rps20 ENSMUSG00000028234 82.99 862.35 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
83. Ndufa12 ENSMUSG00000020022 80.13 832.64 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
84. F2r ENSMUSG00000048376 78.70 817.78 coagulation factor II (thrombin) receptor [Source:MGI Symbol;Acc:MGI:101802]
85. Hmgn1 ENSMUSG00000040681 77.27 802.92 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
86. Ywhag ENSMUSG00000051391 77.27 802.92 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide [Source:MGI Symbol;Acc:MGI:108109]
87. H3f3b ENSMUSG00000016559 75.84 788.06 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
88. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 75.84 788.06 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
89. Cdkn1c ENSMUSG00000037664 74.41 773.20 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
90. Jund ENSMUSG00000071076, ENSMUSG00000110974 74.41 773.20 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
91. Ywhaz ENSMUSG00000022285 74.41 773.20 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
92. Hnrnpa2b1 ENSMUSG00000004980 72.98 758.34 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
93. Ywhae ENSMUSG00000020849 72.98 758.34 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
94. Ddx39b ENSMUSG00000019432 71.55 743.48 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
95. Dlk1 ENSMUSG00000040856, ENSMUSG00000098411 71.55 743.48 delta like non-canonical Notch ligand 1 [Source:MGI Symbol;Acc:MGI:94900]
96. Son ENSMUSG00000022961 71.55 743.48 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
97. Sub1 ENSMUSG00000022205 71.55 743.48 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
98. Arpc2 ENSMUSG00000006304 70.11 728.52 actin related protein 2/3 complex, subunit 2 [Source:MGI Symbol;Acc:MGI:1923959]
99. Crabp1 ENSMUSG00000032291 70.11 728.52 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
100. Rps5 ENSMUSG00000012848 70.11 728.52 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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