Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s50.

Sample reads: 96,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4190.34 43541.22 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Rnr2 ENSMUSG00000064339 3514.53 36518.98 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
3. Ptma ENSMUSG00000026238 3357.75 34889.90 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Nd4 ENSMUSG00000064363 2888.95 30018.66 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2347.08 24388.17 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Atp6 ENSMUSG00000064357 2211.61 22980.52 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Co2 ENSMUSG00000064354 1931.54 20070.35 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. Gm10800 ENSMUSG00000075014 1229.86 12779.30 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
9. mt-Nd2 ENSMUSG00000064345 1213.11 12605.25 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Co1 ENSMUSG00000064351 1082.21 11245.09 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. mt-Nd5 ENSMUSG00000064367 843.24 8761.99 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. mt-Nd3 ENSMUSG00000064360 803.67 8350.82 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Mdk ENSMUSG00000027239 678.86 7053.94 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. mt-Co3 ENSMUSG00000064358 637.76 6626.87 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Actb ENSMUSG00000029580 608.84 6326.37 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
16. Hbb-y ENSMUSG00000052187 575.35 5978.38 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
17. Igf2 ENSMUSG00000048583 546.43 5677.88 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. H19 ENSMUSG00000000031 540.35 5614.70 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
19. Hba-x ENSMUSG00000055609 474.90 4934.62 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
20. Hmga2 ENSMUSG00000056758 474.90 4934.62 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
21. Hba-a1 ENSMUSG00000069919 465.76 4839.65 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
22. Gm13340 ENSMUSG00000083563 398.79 4143.77 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
23. Eef1a1 ENSMUSG00000037742 362.26 3764.19 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
24. Hbb-bh1 ENSMUSG00000052217 296.81 3084.11 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
25. Peg3 ENSMUSG00000002265 255.71 2657.05 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
26. Tuba1b ENSMUSG00000023004 246.58 2562.18 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
27. Hsp90ab1 ENSMUSG00000023944 234.40 2435.62 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
28. mt-Rnr1 ENSMUSG00000064337 234.40 2435.62 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
29. Rpsa ENSMUSG00000032518 231.36 2404.03 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
30. Npm1 ENSMUSG00000057113 217.66 2261.67 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
31. Gm17132 ENSMUSG00000061331 208.53 2166.81 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
32. Hba-a2 ENSMUSG00000069917 200.92 2087.73 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
33. Tubb5 ENSMUSG00000001525 199.40 2071.94 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
34. Nedd4 ENSMUSG00000032216 194.83 2024.45 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
35. Pbx1 ENSMUSG00000052534 188.74 1961.17 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
36. Malat1 ENSMUSG00000092341 185.70 1929.58 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
37. Cfl1 ENSMUSG00000056201 178.09 1850.51 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
38. Col1a2 ENSMUSG00000029661 178.09 1850.51 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
39. Pkm ENSMUSG00000032294 168.95 1755.54 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
40. Ubb ENSMUSG00000019505 167.43 1739.74 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
41. Set ENSMUSG00000054766 164.39 1708.15 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
42. Ybx1 ENSMUSG00000028639 162.86 1692.25 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
43. Atp5g3 ENSMUSG00000018770 156.78 1629.08 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
44. Grb10 ENSMUSG00000020176 153.73 1597.39 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
45. Hnrnpc ENSMUSG00000060373 143.08 1486.72 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
46. Eif4g2 ENSMUSG00000005610 141.56 1470.93 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
47. Sfrp1 ENSMUSG00000031548 136.99 1423.44 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
48. Eif5a ENSMUSG00000078812 135.47 1407.65 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
49. Fkbp1a ENSMUSG00000032966 130.90 1360.16 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
50. Tpt1 ENSMUSG00000060126 129.38 1344.37 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
51. Banf1 ENSMUSG00000024844 121.77 1265.29 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
52. Myl6 ENSMUSG00000090841 117.20 1217.81 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
53. Ywhab ENSMUSG00000018326 117.20 1217.81 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
54. Pcbp1 ENSMUSG00000051695 115.68 1202.01 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
55. Cox8a ENSMUSG00000035885 112.64 1170.43 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
56. Rpl4 ENSMUSG00000032399 112.64 1170.43 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
57. Col3a1 ENSMUSG00000026043 111.11 1154.53 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
58. Rps26 ENSMUSG00000025362 111.11 1154.53 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
59. Ago2 ENSMUSG00000036698 106.55 1107.15 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
60. Rpl23 ENSMUSG00000071415 106.55 1107.15 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
61. Pabpc1 ENSMUSG00000022283 105.02 1091.25 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
62. Rrm2 ENSMUSG00000020649 103.50 1075.45 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
63. Chchd2 ENSMUSG00000070493 100.46 1043.87 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
64. Meg3 ENSMUSG00000021268 98.94 1028.07 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
65. Paics ENSMUSG00000029247 98.94 1028.07 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
66. Ran ENSMUSG00000029430 98.94 1028.07 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
67. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 97.41 1012.17 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
68. Cdc42 ENSMUSG00000006699 95.89 996.38 cell division cycle 42 [Source:MGI Symbol;Acc:MGI:106211]
69. Ngfrap1 94.37 980.59 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
70. Wbp5 94.37 980.59 WW domain binding protein 5
71. Gpc3 ENSMUSG00000055653 92.85 964.79 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
72. Rps5 ENSMUSG00000012848 92.85 964.79 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
73. Tecr ENSMUSG00000031708 92.85 964.79 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
74. Ddx5 ENSMUSG00000020719 91.33 949.00 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
75. Rpl18a ENSMUSG00000045128 89.80 933.10 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
76. Hnrnpa0 ENSMUSG00000007836 88.28 917.30 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
77. Col1a1 ENSMUSG00000001506 86.76 901.51 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
78. Hsp90aa1 ENSMUSG00000021270 86.76 901.51 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
79. Igfbp4 ENSMUSG00000017493 86.76 901.51 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
80. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 85.24 885.72 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
81. Rps9 ENSMUSG00000006333 85.24 885.72 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
82. Trim28 ENSMUSG00000005566 83.72 869.92 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
83. Eef1b2 ENSMUSG00000025967 82.19 854.02 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
84. Gm21897 ENSMUSG00000094472 82.19 854.02 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
85. Hbb-bt ENSMUSG00000073940 82.19 854.02 hemoglobin, beta adult t chain [Source:MGI Symbol;Acc:MGI:5474850]
86. Lamp1 ENSMUSG00000031447 82.19 854.02 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
87. Rps4x ENSMUSG00000031320 82.19 854.02 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
88. H3f3b ENSMUSG00000016559 79.15 822.44 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
89. U2af2 ENSMUSG00000030435 79.15 822.44 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
90. Rplp1 ENSMUSG00000007892 77.63 806.64 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
91. Ywhae ENSMUSG00000020849 77.63 806.64 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
92. Ywhag ENSMUSG00000051391 77.63 806.64 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide [Source:MGI Symbol;Acc:MGI:108109]
93. Anp32b ENSMUSG00000028333 74.58 774.95 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
94. Fscn1 ENSMUSG00000029581 74.58 774.95 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
95. Gm5805 ENSMUSG00000061848 74.58 774.95 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
96. Marcks ENSMUSG00000069662 74.58 774.95 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
97. Sparc ENSMUSG00000018593 74.58 774.95 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
98. Cltc ENSMUSG00000047126 73.06 759.16 clathrin, heavy polypeptide (Hc) [Source:MGI Symbol;Acc:MGI:2388633]
99. Dact1 ENSMUSG00000044548 73.06 759.16 dishevelled-binding antagonist of beta-catenin 1 [Source:MGI Symbol;Acc:MGI:1891740]
100. Gm26905 ENSMUSG00000097695 71.54 743.36 predicted gene, 26905 [Source:MGI Symbol;Acc:MGI:5477399]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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