Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s49.

Sample reads: 96,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3985.50 41413.14 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Rnr2 ENSMUSG00000064339 3546.36 36850.05 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
3. Ptma ENSMUSG00000026238 3473.17 36089.54 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Nd4 ENSMUSG00000064363 3359.11 34904.35 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2474.18 25709.08 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 2184.28 22696.75 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Atp6 ENSMUSG00000064357 2088.27 21699.11 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
8. mt-Nd5 ENSMUSG00000064367 1562.64 16237.32 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
9. mt-Nd2 ENSMUSG00000064345 1391.55 14459.53 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Co1 ENSMUSG00000064351 1075.03 11170.58 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. mt-Nd3 ENSMUSG00000064360 789.88 8207.60 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. Mdk ENSMUSG00000027239 664.41 6903.85 midkine [Source:MGI Symbol;Acc:MGI:96949]
13. H19 ENSMUSG00000000031 637.79 6627.24 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
14. mt-Co3 ENSMUSG00000064358 636.84 6617.37 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Actb ENSMUSG00000029580 633.04 6577.89 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
16. Hmga2 ENSMUSG00000056758 576.01 5985.29 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
17. Igf2 ENSMUSG00000048583 542.74 5639.58 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. Gm13340 ENSMUSG00000083563 400.17 4158.15 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Eef1a1 ENSMUSG00000037742 356.44 3703.75 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
20. mt-Rnr1 ENSMUSG00000064337 352.64 3664.27 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
21. Nedd4 ENSMUSG00000032216 254.74 2646.99 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
22. Hsp90ab1 ENSMUSG00000023944 252.84 2627.25 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
23. Peg3 ENSMUSG00000002265 246.18 2558.04 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
24. Set ENSMUSG00000054766 229.07 2380.26 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
25. Rpsa ENSMUSG00000032518 212.91 2212.34 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
26. Tubb5 ENSMUSG00000001525 207.21 2153.11 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
27. Npm1 ENSMUSG00000057113 200.56 2084.01 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
28. Cfl1 ENSMUSG00000056201 194.85 2024.68 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
29. Pbx1 ENSMUSG00000052534 192.00 1995.06 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
30. Tuba1b ENSMUSG00000023004 187.25 1945.71 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
31. Hbb-y ENSMUSG00000052187 184.40 1916.09 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
32. Malat1 ENSMUSG00000092341 177.75 1846.99 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
33. Hba-x ENSMUSG00000055609 173.94 1807.40 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
34. Hba-a1 ENSMUSG00000069919 166.34 1728.43 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
35. Pkm ENSMUSG00000032294 166.34 1728.43 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
36. Ubb ENSMUSG00000019505 164.44 1708.69 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
37. Grb10 ENSMUSG00000020176 155.88 1619.74 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
38. Tpt1 ENSMUSG00000060126 149.23 1550.64 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
39. Rpl4 ENSMUSG00000032399 141.63 1471.67 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
40. Col1a2 ENSMUSG00000029661 139.73 1451.93 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
41. Hnrnpc ENSMUSG00000060373 139.73 1451.93 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
42. Fkbp1a ENSMUSG00000032966 137.82 1432.08 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
43. Banf1 ENSMUSG00000024844 136.87 1422.21 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
44. Eif4g2 ENSMUSG00000005610 136.87 1422.21 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
45. Sfrp1 ENSMUSG00000031548 129.27 1343.24 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
46. Ago2 ENSMUSG00000036698 127.37 1323.50 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
47. Ybx1 ENSMUSG00000028639 127.37 1323.50 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
48. Rrm2 ENSMUSG00000020649 126.42 1313.62 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
49. Atp5g3 ENSMUSG00000018770 123.57 1284.01 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
50. Col1a1 ENSMUSG00000001506 120.72 1254.40 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
51. Rps26 ENSMUSG00000025362 118.81 1234.55 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
52. Gm17132 ENSMUSG00000061331 117.86 1224.68 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
53. Pabpc1 ENSMUSG00000022283 116.91 1214.81 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
54. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 116.91 1214.81 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
55. Eif5a ENSMUSG00000078812 112.16 1165.45 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
56. Hsp90aa1 ENSMUSG00000021270 111.21 1155.58 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
57. Rpl23 ENSMUSG00000071415 110.26 1145.71 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
58. Trim28 ENSMUSG00000005566 110.26 1145.71 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
59. Ywhab ENSMUSG00000018326 108.36 1125.96 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
60. Chchd2 ENSMUSG00000070493 107.41 1116.09 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
61. Myl6 ENSMUSG00000090841 105.51 1096.35 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
62. U2af2 ENSMUSG00000030435 105.51 1096.35 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
63. Ngfrap1 104.56 1086.48 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
64. Rpl18a ENSMUSG00000045128 103.61 1076.61 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
65. Wbp5 99.80 1037.02 WW domain binding protein 5
66. Eef1b2 ENSMUSG00000025967 97.90 1017.27 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
67. Col3a1 ENSMUSG00000026043 94.10 977.79 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
68. Paics ENSMUSG00000029247 92.20 958.05 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
69. Pcbp1 ENSMUSG00000051695 91.25 948.17 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
70. Cdkn1c ENSMUSG00000037664 88.40 918.56 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
71. Cox8a ENSMUSG00000035885 88.40 918.56 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
72. Kpnb1 ENSMUSG00000001440 86.50 898.82 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
73. Cdk4 ENSMUSG00000006728 85.55 888.95 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
74. Ddx39b ENSMUSG00000019432 85.55 888.95 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
75. Hbb-bh1 ENSMUSG00000052217 83.65 869.20 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
76. Ran ENSMUSG00000029430 82.69 859.23 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
77. Gm10800 ENSMUSG00000075014 81.74 849.36 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
78. Rps20 ENSMUSG00000028234 80.79 839.48 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
79. Gpc3 ENSMUSG00000055653 79.84 829.61 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
80. Morf4l1 ENSMUSG00000062270 79.84 829.61 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
81. Anp32b ENSMUSG00000028333 77.94 809.87 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
82. Marcks ENSMUSG00000069662 76.99 800.00 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
83. Meg3 ENSMUSG00000021268 76.99 800.00 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
84. Hmgn1 ENSMUSG00000040681 76.04 790.13 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
85. Tecr ENSMUSG00000031708 76.04 790.13 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
86. Eef2 ENSMUSG00000034994 75.09 780.26 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
87. Gm5805 ENSMUSG00000061848 75.09 780.26 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
88. Tsc22d1 ENSMUSG00000022010 75.09 780.26 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
89. Top1 ENSMUSG00000070544 73.19 760.51 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
90. Atxn7l3b ENSMUSG00000074748 72.24 750.64 ataxin 7-like 3B [Source:MGI Symbol;Acc:MGI:1914971]
91. Jund ENSMUSG00000071076, ENSMUSG00000110974 72.24 750.64 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
92. Son ENSMUSG00000022961 72.24 750.64 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
93. Sparc ENSMUSG00000018593 72.24 750.64 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
94. Fkbp4 ENSMUSG00000030357 71.29 740.77 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
95. Hba-a2 ENSMUSG00000069917 70.34 730.90 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
96. Igfbp4 ENSMUSG00000017493 70.34 730.90 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
97. Serbp1 ENSMUSG00000036371 69.39 721.03 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
98. Gm21897 ENSMUSG00000094472 68.44 711.16 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
99. Rpl26 ENSMUSG00000060938 68.44 711.16 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
100. Ddx5 ENSMUSG00000020719 67.49 701.29 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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