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Experiment Mouse_E11_5_slice_1, section s48.

Sample reads: 96,254. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 5048.36 52448.18 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Cytb ENSMUSG00000064370 4532.19 47085.61 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. Ptma ENSMUSG00000026238 3807.38 39555.45 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Nd4 ENSMUSG00000064363 3017.44 31348.64 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2805.18 29143.44 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 2196.15 22816.14 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Atp6 ENSMUSG00000064357 1905.50 19796.53 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
8. mt-Nd5 ENSMUSG00000064367 1519.57 15787.04 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
9. mt-Nd2 ENSMUSG00000064345 1370.03 14233.45 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. Gm10800 ENSMUSG00000075014 1360.38 14133.19 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
11. mt-Co1 ENSMUSG00000064351 1066.11 11075.98 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
12. mt-Nd3 ENSMUSG00000064360 945.51 9823.05 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. mt-Co3 ENSMUSG00000064358 722.40 7505.12 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
14. H19 ENSMUSG00000000031 717.58 7455.05 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
15. Actb ENSMUSG00000029580 568.03 5901.35 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
16. Hmga2 ENSMUSG00000056758 489.64 5086.94 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
17. Gm13340 ENSMUSG00000083563 472.76 4911.58 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. mt-Rnr1 ENSMUSG00000064337 438.99 4560.73 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
19. Mdk ENSMUSG00000027239 434.16 4510.55 midkine [Source:MGI Symbol;Acc:MGI:96949]
20. Eef1a1 ENSMUSG00000037742 354.57 3683.68 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
21. Igf2 ENSMUSG00000048583 341.30 3545.82 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
22. Npm1 ENSMUSG00000057113 238.79 2480.83 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Rpsa ENSMUSG00000032518 233.97 2430.75 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
24. Nedd4 ENSMUSG00000032216 225.52 2342.96 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Peg3 ENSMUSG00000002265 224.32 2330.49 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
26. Tuba1b ENSMUSG00000023004 212.26 2205.20 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
27. Set ENSMUSG00000054766 209.85 2180.16 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
28. Pkm ENSMUSG00000032294 205.02 2129.98 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
29. Tubb5 ENSMUSG00000001525 201.40 2092.38 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
30. Hbb-y ENSMUSG00000052187 197.79 2054.87 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
31. Gm17132 ENSMUSG00000061331 196.58 2042.30 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
32. Malat1 ENSMUSG00000092341 194.17 2017.26 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
33. Hsp90ab1 ENSMUSG00000023944 186.93 1942.04 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
34. Ubb ENSMUSG00000019505 162.81 1691.46 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
35. Pbx1 ENSMUSG00000052534 154.37 1603.77 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
36. Cfl1 ENSMUSG00000056201 144.72 1503.52 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
37. Grb10 ENSMUSG00000020176 144.72 1503.52 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
38. Hba-a1 ENSMUSG00000069919 142.31 1478.48 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
39. Tpt1 ENSMUSG00000060126 138.69 1440.87 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
40. Hnrnpc ENSMUSG00000060373 135.07 1403.26 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
41. Rpl4 ENSMUSG00000032399 135.07 1403.26 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
42. Rps26 ENSMUSG00000025362 132.66 1378.22 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
43. Hba-x ENSMUSG00000055609 121.81 1265.50 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
44. Eif4g2 ENSMUSG00000005610 119.40 1240.46 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
45. Col1a2 ENSMUSG00000029661 116.98 1215.32 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
46. Eef1b2 ENSMUSG00000025967 114.57 1190.29 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
47. Rpl18a ENSMUSG00000045128 114.57 1190.29 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
48. Rpl23 ENSMUSG00000071415 112.16 1165.25 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
49. Myl6 ENSMUSG00000090841 110.95 1152.68 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
50. U2af2 ENSMUSG00000030435 110.95 1152.68 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
51. Fkbp1a ENSMUSG00000032966 109.75 1140.21 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
52. Ywhab ENSMUSG00000018326 106.13 1102.60 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
53. Pabpc1 ENSMUSG00000022283 104.92 1090.03 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
54. Ybx1 ENSMUSG00000028639 101.30 1052.42 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
55. Atp5g3 ENSMUSG00000018770 100.10 1039.95 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
56. Cdkn1c ENSMUSG00000037664 100.10 1039.95 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
57. Banf1 ENSMUSG00000024844 98.89 1027.38 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
58. Gm21897 ENSMUSG00000094472 98.89 1027.38 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
59. Gpc3 ENSMUSG00000055653 98.89 1027.38 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
60. Paics ENSMUSG00000029247 98.89 1027.38 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
61. Tecr ENSMUSG00000031708 97.69 1014.92 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
62. Hsp90aa1 ENSMUSG00000021270 96.48 1002.35 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
63. Col3a1 ENSMUSG00000026043 94.07 977.31 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
64. Eif5a ENSMUSG00000078812 92.86 964.74 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
65. Hbb-bh1 ENSMUSG00000052217 90.45 939.70 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
66. Cdk4 ENSMUSG00000006728 88.04 914.66 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
67. Ndufa12 ENSMUSG00000020022 88.04 914.66 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
68. Rps20 ENSMUSG00000028234 86.83 902.09 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
69. Wbp5 86.83 902.09 WW domain binding protein 5
70. Gm5805 ENSMUSG00000061848 85.63 889.62 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
71. Rplp1 ENSMUSG00000007892 83.21 864.48 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
72. Sfrp1 ENSMUSG00000031548 83.21 864.48 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
73. Son ENSMUSG00000022961 82.01 852.01 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
74. Rrm2 ENSMUSG00000020649 79.60 826.98 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
75. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 79.60 826.98 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
76. Gm14303 ENSMUSG00000081344 78.39 814.41 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
77. Ago2 ENSMUSG00000036698 77.18 801.83 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
78. Chchd2 ENSMUSG00000070493 77.18 801.83 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
79. Top2a ENSMUSG00000020914 75.98 789.37 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
80. Lamp1 ENSMUSG00000031447 74.77 776.80 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
81. Top1 ENSMUSG00000070544 74.77 776.80 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
82. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 72.36 751.76 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
83. Col1a1 ENSMUSG00000001506 69.95 726.72 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
84. Ngfrap1 69.95 726.72 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
85. Trim28 ENSMUSG00000005566 69.95 726.72 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
86. Morf4l1 ENSMUSG00000062270 68.74 714.15 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
87. Sec31a ENSMUSG00000035325 68.74 714.15 Sec31 homolog A (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:1916412]
88. Gm14586 ENSMUSG00000083621 67.54 701.68 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
89. Scd2 ENSMUSG00000025203 67.54 701.68 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
90. Sparc ENSMUSG00000018593 67.54 701.68 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
91. Hmgn1 ENSMUSG00000040681 66.33 689.11 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
92. Rps5 ENSMUSG00000012848 65.12 676.54 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
93. Cox8a ENSMUSG00000035885 63.92 664.07 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
94. Eef2 ENSMUSG00000034994 63.92 664.07 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
95. Serbp1 ENSMUSG00000036371 63.92 664.07 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
96. 2810417H13Rik 62.71 651.50 RIKEN cDNA 2810417H13 gene
97. Anp32b ENSMUSG00000028333 62.71 651.50 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
98. Nr2f2 ENSMUSG00000030551 62.71 651.50 nuclear receptor subfamily 2, group F, member 2 [Source:MGI Symbol;Acc:MGI:1352452]
99. Tcf4 ENSMUSG00000053477 62.71 651.50 transcription factor 4 [Source:MGI Symbol;Acc:MGI:98506]
100. Tmpo ENSMUSG00000019961 62.71 651.50 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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