Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s47.

Sample reads: 96,248. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4438.57 46116.07 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Rnr2 ENSMUSG00000064339 4157.36 43194.34 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
3. mt-Nd4 ENSMUSG00000064363 3608.34 37490.10 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. Ptma ENSMUSG00000026238 3599.42 37397.43 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
5. mt-Nd1 ENSMUSG00000064341 2799.55 29086.90 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 2532.63 26313.64 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Atp6 ENSMUSG00000064357 2350.51 24421.44 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
8. mt-Nd5 ENSMUSG00000064367 1689.01 17548.56 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
9. mt-Nd2 ENSMUSG00000064345 1266.76 13161.44 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Co1 ENSMUSG00000064351 1202.48 12493.58 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. mt-Nd3 ENSMUSG00000064360 906.10 9414.24 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. H19 ENSMUSG00000000031 741.84 7707.60 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. mt-Co3 ENSMUSG00000064358 667.75 6937.82 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
14. Gm10800 ENSMUSG00000075014 599.01 6223.62 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
15. Mdk ENSMUSG00000027239 579.37 6019.57 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. mt-Rnr1 ENSMUSG00000064337 568.66 5908.29 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
17. Actb ENSMUSG00000029580 507.06 5268.28 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
18. Gm13340 ENSMUSG00000083563 475.82 4943.70 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Hmga2 ENSMUSG00000056758 414.22 4303.68 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
20. Eef1a1 ENSMUSG00000037742 385.65 4006.84 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
21. Igf2 ENSMUSG00000048583 380.30 3951.26 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
22. Hbb-y ENSMUSG00000052187 308.88 3209.22 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
23. Npm1 ENSMUSG00000057113 234.78 2439.33 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Nedd4 ENSMUSG00000032216 232.11 2411.59 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Peg3 ENSMUSG00000002265 230.32 2392.99 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
26. Hba-x ENSMUSG00000055609 220.50 2290.96 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
27. Rpsa ENSMUSG00000032518 213.36 2216.78 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
28. Set ENSMUSG00000054766 210.68 2188.93 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
29. Tuba1b ENSMUSG00000023004 197.29 2049.81 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
30. Hba-a1 ENSMUSG00000069919 194.61 2021.97 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
31. Hsp90ab1 ENSMUSG00000023944 185.68 1929.19 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
32. Cfl1 ENSMUSG00000056201 178.54 1855.00 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
33. Malat1 ENSMUSG00000092341 172.29 1790.07 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
34. Pbx1 ENSMUSG00000052534 169.62 1762.33 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
35. Ubb ENSMUSG00000019505 169.62 1762.33 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
36. Eif4g2 ENSMUSG00000005610 157.12 1632.45 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
37. Tubb5 ENSMUSG00000001525 156.22 1623.10 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
38. Gm17132 ENSMUSG00000061331 154.44 1604.61 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
39. Grb10 ENSMUSG00000020176 145.51 1511.83 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
40. Rpl4 ENSMUSG00000032399 145.51 1511.83 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
41. Fkbp1a ENSMUSG00000032966 141.94 1474.74 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
42. Hnrnpc ENSMUSG00000060373 141.05 1465.49 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
43. Pkm ENSMUSG00000032294 140.16 1456.24 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
44. Hbb-bh1 ENSMUSG00000052217 139.26 1446.89 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
45. Tpt1 ENSMUSG00000060126 135.69 1409.80 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
46. Eif5a ENSMUSG00000078812 126.77 1317.12 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
47. Banf1 ENSMUSG00000024844 125.87 1307.77 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
48. Rpl23 ENSMUSG00000071415 120.52 1252.18 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
49. Atp5g3 ENSMUSG00000018770 118.73 1233.59 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
50. Col3a1 ENSMUSG00000026043 117.84 1224.34 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
51. Col1a2 ENSMUSG00000029661 116.05 1205.74 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
52. Hsp90aa1 ENSMUSG00000021270 112.48 1168.65 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
53. Rps26 ENSMUSG00000025362 111.59 1159.40 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
54. Rrm2 ENSMUSG00000020649 111.59 1159.40 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
55. Myl6 ENSMUSG00000090841 110.70 1150.16 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
56. Gpc3 ENSMUSG00000055653 108.91 1131.56 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
57. Paics ENSMUSG00000029247 108.02 1122.31 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
58. Rps20 ENSMUSG00000028234 107.13 1113.06 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
59. Hba-a2 ENSMUSG00000069917 106.23 1103.71 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
60. Cdkn1c ENSMUSG00000037664 102.66 1066.62 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
61. Chchd2 ENSMUSG00000070493 102.66 1066.62 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
62. Ybx1 ENSMUSG00000028639 102.66 1066.62 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
63. Eef1b2 ENSMUSG00000025967 100.88 1048.13 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
64. Ago2 ENSMUSG00000036698 99.98 1038.78 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
65. Wbp5 96.41 1001.69 WW domain binding protein 5
66. Pabpc1 ENSMUSG00000022283 95.52 992.44 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
67. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 95.52 992.44 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
68. Sfrp1 ENSMUSG00000031548 92.84 964.59 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
69. Tecr ENSMUSG00000031708 91.06 946.10 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
70. Tsc22d1 ENSMUSG00000022010 90.16 936.75 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
71. Ywhab ENSMUSG00000018326 89.27 927.50 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
72. Trim28 ENSMUSG00000005566 87.49 909.01 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
73. Rpl18a ENSMUSG00000045128 85.70 890.41 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
74. Gm5805 ENSMUSG00000061848 84.81 881.16 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
75. Kpnb1 ENSMUSG00000001440 83.91 871.81 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
76. Cdk4 ENSMUSG00000006728 78.56 816.23 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
77. Marcks ENSMUSG00000069662 74.99 779.13 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
78. Sub1 ENSMUSG00000022205 74.99 779.13 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
79. Col1a1 ENSMUSG00000001506 74.10 769.89 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
80. Rps4x ENSMUSG00000031320 73.20 760.54 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
81. Gm14303 ENSMUSG00000081344 72.31 751.29 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
82. Son ENSMUSG00000022961 71.42 742.04 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
83. Ddx39b ENSMUSG00000019432 70.52 732.69 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
84. Cox8a ENSMUSG00000035885 69.63 723.45 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
85. Ngfrap1 69.63 723.45 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
86. Pcbp1 ENSMUSG00000051695 69.63 723.45 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
87. Sparc ENSMUSG00000018593 68.74 714.20 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
88. Hmgn1 ENSMUSG00000040681 66.95 695.60 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
89. Top2a ENSMUSG00000020914 66.95 695.60 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
90. Hspe1 ENSMUSG00000073676 65.17 677.11 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
91. Gm21897 ENSMUSG00000094472 64.28 667.86 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
92. Hnrnpk ENSMUSG00000021546 64.28 667.86 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
93. Morf4l1 ENSMUSG00000062270 64.28 667.86 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
94. Anp32b ENSMUSG00000028333 63.38 658.51 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
95. Scd2 ENSMUSG00000025203 63.38 658.51 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
96. Ndufa12 ENSMUSG00000020022 62.49 649.26 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
97. Cdk1 ENSMUSG00000019942 61.60 640.01 cyclin-dependent kinase 1 [Source:MGI Symbol;Acc:MGI:88351]
98. Hnrnpa0 ENSMUSG00000007836 61.60 640.01 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
99. Hnrnpa2b1 ENSMUSG00000004980 61.60 640.01 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
100. Serbp1 ENSMUSG00000036371 61.60 640.01 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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