Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s46.

Sample reads: 96,250. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 5239.21 54434.62 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Cytb ENSMUSG00000064370 5103.08 53020.25 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd4 ENSMUSG00000064363 3356.68 34875.41 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. Ptma ENSMUSG00000026238 3150.83 32736.66 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
5. mt-Nd1 ENSMUSG00000064341 2847.59 29586.04 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 2527.75 26262.95 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Atp6 ENSMUSG00000064357 2413.75 25078.51 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
8. mt-Nd2 ENSMUSG00000064345 1540.55 16006.09 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Nd5 ENSMUSG00000064367 1400.00 14545.79 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
10. mt-Co1 ENSMUSG00000064351 1189.72 12361.01 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. mt-Nd3 ENSMUSG00000064360 998.26 10371.77 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. mt-Co3 ENSMUSG00000064358 719.37 7474.15 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. H19 ENSMUSG00000000031 675.10 7014.19 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
14. Hbb-y ENSMUSG00000052187 590.99 6140.30 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
15. Mdk ENSMUSG00000027239 552.25 5737.80 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. Actb ENSMUSG00000029580 548.93 5703.30 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
17. Gm13340 ENSMUSG00000083563 480.32 4990.45 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Gm10800 ENSMUSG00000075014 444.90 4622.45 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
19. mt-Rnr1 ENSMUSG00000064337 433.83 4507.43 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
20. Hba-a1 ENSMUSG00000069919 385.14 4001.55 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
21. Igf2 ENSMUSG00000048583 382.92 3978.48 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
22. Eef1a1 ENSMUSG00000037742 327.59 3403.61 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
23. Hmga2 ENSMUSG00000056758 298.81 3104.59 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
24. Npm1 ENSMUSG00000057113 263.40 2736.69 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
25. Hbb-bh1 ENSMUSG00000052217 261.19 2713.73 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
26. Hba-x ENSMUSG00000055609 253.44 2633.20 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
27. Nedd4 ENSMUSG00000032216 234.62 2437.67 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
28. Pkm ENSMUSG00000032294 230.20 2391.74 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
29. Rpsa ENSMUSG00000032518 229.09 2380.21 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
30. Tuba1b ENSMUSG00000023004 205.85 2138.75 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
31. Peg3 ENSMUSG00000002265 200.32 2081.30 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
32. Cfl1 ENSMUSG00000056201 183.72 1908.82 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
33. Ubb ENSMUSG00000019505 178.18 1851.26 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
34. Malat1 ENSMUSG00000092341 158.26 1644.30 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
35. Hnrnpc ENSMUSG00000060373 157.15 1632.77 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
36. Gm17132 ENSMUSG00000061331 156.05 1621.34 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
37. Tpt1 ENSMUSG00000060126 156.05 1621.34 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
38. Grb10 ENSMUSG00000020176 154.94 1609.80 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
39. Hba-a2 ENSMUSG00000069917 151.62 1575.31 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
40. Eif4g2 ENSMUSG00000005610 147.19 1529.28 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
41. Hsp90ab1 ENSMUSG00000023944 147.19 1529.28 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
42. Rpl4 ENSMUSG00000032399 147.19 1529.28 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
43. Tubb5 ENSMUSG00000001525 144.98 1506.32 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
44. Myl6 ENSMUSG00000090841 140.55 1460.29 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
45. Set ENSMUSG00000054766 139.45 1448.86 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
46. Chchd2 ENSMUSG00000070493 137.23 1425.80 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
47. Banf1 ENSMUSG00000024844 132.81 1379.88 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
48. Pbx1 ENSMUSG00000052534 125.06 1299.35 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
49. Ybx1 ENSMUSG00000028639 125.06 1299.35 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
50. Rps20 ENSMUSG00000028234 117.31 1218.83 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
51. Cdkn1c ENSMUSG00000037664 116.21 1207.40 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
52. Eef1b2 ENSMUSG00000025967 116.21 1207.40 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
53. Ywhab ENSMUSG00000018326 116.21 1207.40 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
54. Col1a2 ENSMUSG00000029661 110.67 1149.84 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
55. Acta2 ENSMUSG00000035783 107.35 1115.35 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
56. Hsp90aa1 ENSMUSG00000021270 107.35 1115.35 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
57. Rpl18a ENSMUSG00000045128 105.14 1092.39 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
58. Rpl23 ENSMUSG00000071415 104.03 1080.86 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
59. Rps4x ENSMUSG00000031320 102.92 1069.32 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
60. Fkbp1a ENSMUSG00000032966 101.82 1057.89 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
61. Son ENSMUSG00000022961 100.71 1046.36 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
62. Atp5g3 ENSMUSG00000018770 99.60 1034.83 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
63. Lamp1 ENSMUSG00000031447 99.60 1034.83 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
64. Paics ENSMUSG00000029247 99.60 1034.83 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
65. Rps26 ENSMUSG00000025362 98.50 1023.40 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
66. Ago2 ENSMUSG00000036698 96.28 1000.33 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
67. Eif5a ENSMUSG00000078812 94.07 977.37 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
68. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 92.96 965.84 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
69. U2af2 ENSMUSG00000030435 92.96 965.84 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
70. Wbp5 92.96 965.84 WW domain binding protein 5
71. Gm5805 ENSMUSG00000061848 91.86 954.41 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
72. Itga6 ENSMUSG00000027111 88.54 919.92 integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
73. Ndufa12 ENSMUSG00000020022 88.54 919.92 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
74. Col3a1 ENSMUSG00000026043 86.32 896.85 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
75. Rrm2 ENSMUSG00000020649 86.32 896.85 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
76. Eef2 ENSMUSG00000034994 85.22 885.42 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
77. Ngfrap1 85.22 885.42 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
78. Rps5 ENSMUSG00000012848 84.11 873.89 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
79. Rplp1 ENSMUSG00000007892 83.00 862.36 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
80. Trim28 ENSMUSG00000005566 80.79 839.40 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
81. Gm14303 ENSMUSG00000081344 78.58 816.43 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
82. Tsc22d1 ENSMUSG00000022010 77.47 804.90 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
83. Pabpc1 ENSMUSG00000022283 76.36 793.37 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
84. Cdk4 ENSMUSG00000006728 74.15 770.41 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
85. Ddx5 ENSMUSG00000020719 73.04 758.87 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
86. Sub1 ENSMUSG00000022205 73.04 758.87 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
87. Tmsb4x ENSMUSG00000049775 73.04 758.87 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
88. Ran ENSMUSG00000029430 71.94 747.45 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
89. Meg3 ENSMUSG00000021268 70.83 735.91 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
90. Tecr ENSMUSG00000031708 70.83 735.91 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
91. Morf4l1 ENSMUSG00000062270 68.62 712.95 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
92. Anp32b ENSMUSG00000028333 67.51 701.42 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
93. Top2a ENSMUSG00000020914 67.51 701.42 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
94. Caprin1 ENSMUSG00000027184 66.40 689.89 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
95. Cdk1 ENSMUSG00000019942 66.40 689.89 cyclin-dependent kinase 1 [Source:MGI Symbol;Acc:MGI:88351]
96. Gm21897 ENSMUSG00000094472 66.40 689.89 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
97. Sparc ENSMUSG00000018593 66.40 689.89 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
98. Cox8a ENSMUSG00000035885 64.19 666.92 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
99. Dynll1 ENSMUSG00000009013 64.19 666.92 dynein light chain LC8-type 1 [Source:MGI Symbol;Acc:MGI:1861457]
100. Scd2 ENSMUSG00000025203 64.19 666.92 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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