Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s45.

Sample reads: 96,257. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 5601.77 58195.88 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Rnr2 ENSMUSG00000064339 4905.94 50967.01 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
3. mt-Nd4 ENSMUSG00000064363 4066.65 42247.77 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Nd1 ENSMUSG00000064341 3197.11 33214.26 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. Ptma ENSMUSG00000026238 3041.93 31602.12 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
6. mt-Co2 ENSMUSG00000064354 2777.46 28854.58 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Atp6 ENSMUSG00000064357 2574.47 26745.75 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
8. mt-Nd2 ENSMUSG00000064345 1581.96 16434.73 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 1278.45 13281.61 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Nd5 ENSMUSG00000064367 1207.21 12541.51 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
11. mt-Nd3 ENSMUSG00000064360 991.53 10300.84 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. H19 ENSMUSG00000000031 806.11 8374.55 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. mt-Co3 ENSMUSG00000064358 790.49 8212.27 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
14. Actb ENSMUSG00000029580 554.32 5758.74 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. Gm13340 ENSMUSG00000083563 470.39 4886.81 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
16. Mdk ENSMUSG00000027239 435.26 4521.85 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. Hbb-y ENSMUSG00000052187 434.28 4511.66 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
18. Igf2 ENSMUSG00000048583 393.29 4085.83 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
19. Eef1a1 ENSMUSG00000037742 384.51 3994.61 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
20. mt-Rnr1 ENSMUSG00000064337 335.72 3487.74 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
21. Hmga2 ENSMUSG00000056758 276.18 2869.19 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
22. Gm10800 ENSMUSG00000075014 266.43 2767.90 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
23. Hba-a1 ENSMUSG00000069919 263.50 2737.46 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
24. Rpsa ENSMUSG00000032518 263.50 2737.46 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
25. Npm1 ENSMUSG00000057113 258.62 2686.76 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
26. Hba-x ENSMUSG00000055609 232.27 2413.02 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
27. Peg3 ENSMUSG00000002265 224.46 2331.88 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
28. Nedd4 ENSMUSG00000032216 219.58 2281.18 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
29. Tuba1b ENSMUSG00000023004 190.30 1977.00 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
30. Ubb ENSMUSG00000019505 163.95 1703.25 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Myl6 ENSMUSG00000090841 160.05 1662.73 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
32. Pkm ENSMUSG00000032294 160.05 1662.73 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
33. Acta2 ENSMUSG00000035783 158.10 1642.48 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
34. Hbb-bh1 ENSMUSG00000052217 157.12 1632.29 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
35. Eif4g2 ENSMUSG00000005610 155.17 1612.04 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
36. Cdkn1c ENSMUSG00000037664 154.19 1601.85 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
37. Tpt1 ENSMUSG00000060126 153.22 1591.78 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
38. Pbx1 ENSMUSG00000052534 152.24 1581.60 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
39. Rpl4 ENSMUSG00000032399 152.24 1581.60 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
40. Tubb5 ENSMUSG00000001525 152.24 1581.60 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
41. Cfl1 ENSMUSG00000056201 151.27 1571.52 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
42. Hnrnpc ENSMUSG00000060373 144.44 1500.56 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
43. Malat1 ENSMUSG00000092341 141.51 1470.12 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
44. Fkbp1a ENSMUSG00000032966 139.56 1449.87 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
45. Rpl23 ENSMUSG00000071415 137.60 1429.50 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
46. Grb10 ENSMUSG00000020176 136.63 1419.43 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
47. Hsp90ab1 ENSMUSG00000023944 132.72 1378.81 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
48. Gm17132 ENSMUSG00000061331 130.77 1358.55 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
49. Rps20 ENSMUSG00000028234 127.85 1328.21 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
50. Ywhab ENSMUSG00000018326 125.89 1307.85 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
51. Eef1b2 ENSMUSG00000025967 122.97 1277.52 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
52. Set ENSMUSG00000054766 121.01 1257.15 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
53. Hba-a2 ENSMUSG00000069917 119.06 1236.90 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
54. Hsp90aa1 ENSMUSG00000021270 116.13 1206.46 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
55. Rpl18a ENSMUSG00000045128 116.13 1206.46 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
56. Banf1 ENSMUSG00000024844 114.18 1186.20 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
57. Chchd2 ENSMUSG00000070493 114.18 1186.20 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
58. Col3a1 ENSMUSG00000026043 114.18 1186.20 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
59. Tsc22d1 ENSMUSG00000022010 104.42 1084.80 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
60. Rrm2 ENSMUSG00000020649 103.45 1074.73 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
61. Rps26 ENSMUSG00000025362 102.47 1064.54 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
62. Lamp1 ENSMUSG00000031447 101.50 1054.47 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
63. Pabpc1 ENSMUSG00000022283 100.52 1044.29 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
64. Eif5a ENSMUSG00000078812 97.59 1013.85 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
65. Wbp5 96.62 1003.77 WW domain binding protein 5
66. Gm5805 ENSMUSG00000061848 88.81 922.63 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
67. Cdk4 ENSMUSG00000006728 87.83 912.45 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
68. Sub1 ENSMUSG00000022205 87.83 912.45 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
69. Ago2 ENSMUSG00000036698 86.86 902.37 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
70. Col1a2 ENSMUSG00000029661 85.88 892.19 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
71. Itga6 ENSMUSG00000027111 85.88 892.19 integrin alpha 6 [Source:MGI Symbol;Acc:MGI:96605]
72. Cox8a ENSMUSG00000035885 83.93 871.94 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
73. Gpc3 ENSMUSG00000055653 83.93 871.94 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
74. Ybx1 ENSMUSG00000028639 83.93 871.94 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
75. Eef2 ENSMUSG00000034994 82.95 861.75 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
76. Tpm4 ENSMUSG00000031799 81.98 851.68 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
77. Tmsb4x ENSMUSG00000049775 81.00 841.50 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
78. U2af2 ENSMUSG00000030435 81.00 841.50 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
79. Atp5g3 ENSMUSG00000018770 80.03 831.42 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
80. Morf4l1 ENSMUSG00000062270 79.05 821.24 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
81. Paics ENSMUSG00000029247 79.05 821.24 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
82. Rps5 ENSMUSG00000012848 79.05 821.24 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
83. Rplp1 ENSMUSG00000007892 76.12 790.80 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
84. Rps4x ENSMUSG00000031320 76.12 790.80 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
85. Gm26917 ENSMUSG00000097971 75.15 780.72 predicted gene, 26917 [Source:MGI Symbol;Acc:MGI:5504032]
86. Son ENSMUSG00000022961 75.15 780.72 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
87. Rps3a1 ENSMUSG00000028081 74.17 770.54 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
88. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 73.19 760.36 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
89. Trim28 ENSMUSG00000005566 73.19 760.36 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
90. Col1a1 ENSMUSG00000001506 72.22 750.28 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
91. Ndufa12 ENSMUSG00000020022 71.24 740.10 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
92. Top2a ENSMUSG00000020914 71.24 740.10 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
93. 2810417H13Rik 70.27 730.02 RIKEN cDNA 2810417H13 gene
94. Gm14303 ENSMUSG00000081344 70.27 730.02 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
95. Rpl26 ENSMUSG00000060938 69.29 719.84 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
96. Hmgn1 ENSMUSG00000040681 66.36 689.40 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
97. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 66.36 689.40 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
98. Ngfrap1 65.39 679.33 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
99. Prdx1 ENSMUSG00000028691 65.39 679.33 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
100. Ran ENSMUSG00000029430 65.39 679.33 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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