Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s44.

Sample reads: 96,241. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4845.12 50343.67 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 4370.94 45416.66 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Rnr2 ENSMUSG00000064339 4313.88 44823.78 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
4. mt-Nd4 ENSMUSG00000064363 3090.26 32109.64 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2782.63 28913.18 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 2552.86 26525.73 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Atp6 ENSMUSG00000064357 2410.99 25051.62 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
8. mt-Nd2 ENSMUSG00000064345 1380.13 14340.37 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 1229.01 12770.14 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Nd3 ENSMUSG00000064360 1055.53 10967.58 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. mt-Nd5 ENSMUSG00000064367 999.25 10382.80 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. mt-Co3 ENSMUSG00000064358 942.19 9789.91 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. H19 ENSMUSG00000000031 933.71 9701.80 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
14. Actb ENSMUSG00000029580 597.54 6208.80 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. Mdk ENSMUSG00000027239 548.20 5696.12 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. Igf2 ENSMUSG00000048583 486.52 5055.23 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Gm13340 ENSMUSG00000083563 441.03 4582.56 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. mt-Rnr1 ENSMUSG00000064337 421.75 4382.23 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
19. Hbb-y ENSMUSG00000052187 396.31 4117.90 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
20. Eef1a1 ENSMUSG00000037742 360.84 3749.34 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
21. Npm1 ENSMUSG00000057113 270.63 2812.01 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Tuba1b ENSMUSG00000023004 266.00 2763.90 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
23. Hmga2 ENSMUSG00000056758 259.84 2699.89 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
24. Hba-a1 ENSMUSG00000069919 248.27 2579.67 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
25. Nedd4 ENSMUSG00000032216 232.08 2411.45 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
26. Rpsa ENSMUSG00000032518 222.05 2307.23 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
27. Tubb5 ENSMUSG00000001525 217.43 2259.23 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
28. Gm10800 ENSMUSG00000075014 213.57 2219.12 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
29. Hba-x ENSMUSG00000055609 213.57 2219.12 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
30. Ubb ENSMUSG00000019505 196.61 2042.89 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Myl6 ENSMUSG00000090841 174.25 1810.56 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
32. Rpl23 ENSMUSG00000071415 170.40 1770.56 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
33. Cdkn1c ENSMUSG00000037664 165.77 1722.45 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
34. Eif4g2 ENSMUSG00000005610 163.46 1698.45 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
35. Peg3 ENSMUSG00000002265 163.46 1698.45 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
36. Tpt1 ENSMUSG00000060126 162.69 1690.45 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
37. Cfl1 ENSMUSG00000056201 155.75 1618.33 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
38. Banf1 ENSMUSG00000024844 149.58 1554.23 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
39. Acta2 ENSMUSG00000035783 148.04 1538.22 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
40. Rpl4 ENSMUSG00000032399 143.41 1490.12 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
41. Chchd2 ENSMUSG00000070493 142.64 1482.11 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
42. Pkm ENSMUSG00000032294 141.10 1466.11 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
43. Rps20 ENSMUSG00000028234 140.33 1458.11 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
44. Rps26 ENSMUSG00000025362 138.01 1434.01 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
45. Set ENSMUSG00000054766 138.01 1434.01 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
46. Ybx1 ENSMUSG00000028639 137.24 1426.01 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
47. Hbb-bh1 ENSMUSG00000052217 134.93 1402.00 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
48. Hsp90ab1 ENSMUSG00000023944 134.16 1394.00 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
49. Rpl18a ENSMUSG00000045128 134.16 1394.00 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
50. Wbp5 133.39 1386.00 WW domain binding protein 5
51. Ndufa12 ENSMUSG00000020022 131.85 1370.00 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
52. Grb10 ENSMUSG00000020176 131.07 1361.90 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
53. Hnrnpc ENSMUSG00000060373 128.76 1337.89 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
54. Eef1b2 ENSMUSG00000025967 127.22 1321.89 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
55. Fkbp1a ENSMUSG00000032966 121.05 1257.78 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
56. Col3a1 ENSMUSG00000026043 117.20 1217.78 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
57. Ago2 ENSMUSG00000036698 112.57 1169.67 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
58. Gm17132 ENSMUSG00000061331 112.57 1169.67 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
59. Pbx1 ENSMUSG00000052534 112.57 1169.67 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
60. Ywhab ENSMUSG00000018326 112.57 1169.67 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
61. Eif5a ENSMUSG00000078812 104.86 1089.56 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
62. Hba-a2 ENSMUSG00000069917 104.86 1089.56 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
63. Gm14303 ENSMUSG00000081344 101.78 1057.55 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
64. Paics ENSMUSG00000029247 101.78 1057.55 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
65. Atp5g3 ENSMUSG00000018770 100.23 1041.45 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
66. U2af2 ENSMUSG00000030435 100.23 1041.45 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
67. Rps5 ENSMUSG00000012848 98.69 1025.45 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
68. Rplp1 ENSMUSG00000007892 95.61 993.44 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
69. Hsp90aa1 ENSMUSG00000021270 92.52 961.34 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
70. Rps4x ENSMUSG00000031320 90.98 945.34 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
71. Cox8a ENSMUSG00000035885 90.21 937.34 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
72. Ddx5 ENSMUSG00000020719 86.35 897.23 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
73. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 86.35 897.23 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
74. Sub1 ENSMUSG00000022205 85.58 889.23 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
75. Tmsb4x ENSMUSG00000049775 85.58 889.23 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
76. Sparc ENSMUSG00000018593 84.81 881.23 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
77. Malat1 ENSMUSG00000092341 83.27 865.22 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
78. Ran ENSMUSG00000029430 83.27 865.22 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
79. Gm5805 ENSMUSG00000061848 82.50 857.22 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
80. Cdk4 ENSMUSG00000006728 81.73 849.22 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
81. Lamp1 ENSMUSG00000031447 80.96 841.22 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
82. Fkbp4 ENSMUSG00000030357 80.19 833.22 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
83. Ddx39b ENSMUSG00000019432 78.64 817.12 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
84. Trim28 ENSMUSG00000005566 78.64 817.12 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
85. Marcksl1 ENSMUSG00000047945 77.87 809.12 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
86. Pabpc1 ENSMUSG00000022283 77.87 809.12 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
87. Marcks ENSMUSG00000069662 76.33 793.11 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
88. Hmgn1 ENSMUSG00000040681 75.56 785.11 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
89. Ngfrap1 75.56 785.11 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
90. Tuba1a ENSMUSG00000072235 74.79 777.11 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
91. Son ENSMUSG00000022961 74.02 769.11 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
92. Pcbp1 ENSMUSG00000051695 73.25 761.11 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
93. Rrm2 ENSMUSG00000020649 73.25 761.11 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
94. Tpm4 ENSMUSG00000031799 73.25 761.11 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
95. Anp32b ENSMUSG00000028333 71.71 745.11 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
96. Gpc3 ENSMUSG00000055653 71.71 745.11 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
97. Hspe1 ENSMUSG00000073676 70.93 737.00 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
98. Rpl32 ENSMUSG00000057841 69.39 721.00 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
99. Tsc22d1 ENSMUSG00000022010 69.39 721.00 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
100. Caprin1 ENSMUSG00000027184 67.85 705.00 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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