Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s43.

Sample reads: 96,255. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4123.98 42844.11 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 4123.26 42836.63 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Nd4 ENSMUSG00000064363 3066.66 31859.59 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Rnr2 ENSMUSG00000064339 2687.71 27922.67 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
5. mt-Nd1 ENSMUSG00000064341 2517.22 26151.45 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 2436.28 25310.56 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Atp6 ENSMUSG00000064357 2185.56 22705.82 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
8. mt-Nd2 ENSMUSG00000064345 1310.19 13611.59 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. H19 ENSMUSG00000000031 1149.73 11944.57 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. mt-Co1 ENSMUSG00000064351 1123.94 11676.63 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. mt-Nd5 ENSMUSG00000064367 1106.75 11498.05 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
12. mt-Nd3 ENSMUSG00000064360 853.88 8870.98 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Mdk ENSMUSG00000027239 654.74 6802.11 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. Igf2 ENSMUSG00000048583 645.42 6705.28 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. Actb ENSMUSG00000029580 632.53 6571.37 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
16. mt-Co3 ENSMUSG00000064358 621.07 6452.31 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
17. Gm13340 ENSMUSG00000083563 420.49 4368.48 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Eef1a1 ENSMUSG00000037742 386.11 4011.30 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
19. mt-Rnr1 ENSMUSG00000064337 355.31 3691.32 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
20. Hmga2 ENSMUSG00000056758 272.93 2835.47 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
21. Nedd4 ENSMUSG00000032216 260.75 2708.94 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
22. Rpsa ENSMUSG00000032518 251.44 2612.21 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
23. Npm1 ENSMUSG00000057113 245.71 2552.69 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Hbb-y ENSMUSG00000052187 244.27 2537.73 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
25. Cfl1 ENSMUSG00000056201 227.80 2366.62 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
26. Tuba1b ENSMUSG00000023004 204.16 2121.02 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
27. Tpt1 ENSMUSG00000060126 191.98 1994.48 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
28. Hsp90ab1 ENSMUSG00000023944 191.26 1987.00 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
29. Eif4g2 ENSMUSG00000005610 190.55 1979.63 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
30. Ubb ENSMUSG00000019505 190.55 1979.63 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Peg3 ENSMUSG00000002265 184.10 1912.62 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
32. Grb10 ENSMUSG00000020176 174.07 1808.42 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
33. Tubb5 ENSMUSG00000001525 174.07 1808.42 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
34. Hba-a1 ENSMUSG00000069919 171.21 1778.70 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
35. Cdkn1c ENSMUSG00000037664 164.76 1711.69 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
36. Pkm ENSMUSG00000032294 159.74 1659.54 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
37. Hba-x ENSMUSG00000055609 156.16 1622.35 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
38. Set ENSMUSG00000054766 154.01 1600.01 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
39. Banf1 ENSMUSG00000024844 149.72 1555.44 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
40. Hnrnpc ENSMUSG00000060373 148.28 1540.48 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
41. Eif5a ENSMUSG00000078812 144.70 1503.29 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
42. Pbx1 ENSMUSG00000052534 144.70 1503.29 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
43. Ybx1 ENSMUSG00000028639 143.27 1488.43 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
44. Myl6 ENSMUSG00000090841 141.84 1473.58 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
45. Fkbp1a ENSMUSG00000032966 138.97 1443.76 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
46. Rrm2 ENSMUSG00000020649 136.10 1413.95 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
47. Atp5g3 ENSMUSG00000018770 133.24 1384.23 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
48. Rpl4 ENSMUSG00000032399 129.66 1347.04 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
49. Acta2 ENSMUSG00000035783 128.23 1332.18 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
50. Rpl23 ENSMUSG00000071415 124.64 1294.89 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
51. Ywhab ENSMUSG00000018326 123.21 1280.03 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
52. Ago2 ENSMUSG00000036698 122.49 1272.55 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
53. Gm10800 ENSMUSG00000075014 120.35 1250.32 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
54. Eef1b2 ENSMUSG00000025967 119.63 1242.84 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
55. Hbb-bh1 ENSMUSG00000052217 119.63 1242.84 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
56. U2af2 ENSMUSG00000030435 119.63 1242.84 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
57. Chchd2 ENSMUSG00000070493 118.91 1235.36 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
58. Hsp90aa1 ENSMUSG00000021270 118.20 1227.98 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
59. Rps26 ENSMUSG00000025362 117.48 1220.50 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
60. Col3a1 ENSMUSG00000026043 116.76 1213.02 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
61. Rps20 ENSMUSG00000028234 115.33 1198.17 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
62. Paics ENSMUSG00000029247 107.45 1116.30 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
63. Malat1 ENSMUSG00000092341 104.59 1086.59 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
64. Gm5805 ENSMUSG00000061848 102.44 1064.25 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
65. Pabpc1 ENSMUSG00000022283 101.72 1056.77 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
66. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 101.00 1049.29 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
67. Ndufa12 ENSMUSG00000020022 98.86 1027.06 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
68. Rpl18a ENSMUSG00000045128 97.42 1012.10 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
69. Marcks ENSMUSG00000069662 95.27 989.76 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
70. Anp32b ENSMUSG00000028333 94.56 982.39 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
71. Cdk4 ENSMUSG00000006728 94.56 982.39 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
72. Ddx39b ENSMUSG00000019432 93.84 974.91 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
73. Gpc3 ENSMUSG00000055653 90.98 945.19 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
74. Pcbp1 ENSMUSG00000051695 88.83 922.86 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
75. Kpnb1 ENSMUSG00000001440 86.68 900.52 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
76. Lamp1 ENSMUSG00000031447 85.96 893.04 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
77. Ran ENSMUSG00000029430 85.24 885.56 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
78. Trim28 ENSMUSG00000005566 85.24 885.56 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
79. Igfbp4 ENSMUSG00000017493 84.53 878.18 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
80. Ngfrap1 83.10 863.33 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
81. Rps3a1 ENSMUSG00000028081 83.10 863.33 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
82. Tecr ENSMUSG00000031708 82.38 855.85 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
83. Wbp5 82.38 855.85 WW domain binding protein 5
84. Col1a2 ENSMUSG00000029661 81.66 848.37 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
85. Cox8a ENSMUSG00000035885 81.66 848.37 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
86. Rps5 ENSMUSG00000012848 81.66 848.37 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
87. Hba-a2 ENSMUSG00000069917 79.51 826.03 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
88. Tmsb4x ENSMUSG00000049775 79.51 826.03 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
89. Sub1 ENSMUSG00000022205 78.80 818.65 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
90. Hmgn1 ENSMUSG00000040681 77.36 803.69 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
91. Hspe1 ENSMUSG00000073676 76.65 796.32 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
92. Morf4l1 ENSMUSG00000062270 76.65 796.32 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
93. Tmpo ENSMUSG00000019961 76.65 796.32 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
94. Tuba1a ENSMUSG00000072235 76.65 796.32 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
95. Rps4x ENSMUSG00000031320 74.50 773.98 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
96. Son ENSMUSG00000022961 74.50 773.98 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
97. Rplp1 ENSMUSG00000007892 73.78 766.50 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
98. Arpc2 ENSMUSG00000006304 73.07 759.13 actin related protein 2/3 complex, subunit 2 [Source:MGI Symbol;Acc:MGI:1923959]
99. Gm14303 ENSMUSG00000081344 73.07 759.13 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
100. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 72.35 751.65 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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