Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s42.

Sample reads: 96,257. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4223.30 43875.31 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Rnr2 ENSMUSG00000064339 3882.56 40335.41 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
3. Ptma ENSMUSG00000026238 3507.64 36440.41 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Nd4 ENSMUSG00000064363 2889.98 30023.62 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2678.02 27821.60 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 2316.77 24068.62 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Atp6 ENSMUSG00000064357 2077.46 21582.46 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
8. mt-Nd2 ENSMUSG00000064345 1309.38 13602.98 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 1038.16 10785.31 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Nd5 ENSMUSG00000064367 1019.93 10595.92 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
11. mt-Nd3 ENSMUSG00000064360 927.62 9636.92 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. H19 ENSMUSG00000000031 905.97 9412.00 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. mt-Co3 ENSMUSG00000064358 765.80 7955.80 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
14. Igf2 ENSMUSG00000048583 678.05 7044.17 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. Actb ENSMUSG00000029580 539.02 5599.81 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
16. Mdk ENSMUSG00000027239 525.35 5457.79 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. Gm13340 ENSMUSG00000083563 423.93 4404.15 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Gm10800 ENSMUSG00000075014 418.23 4344.94 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
19. Eef1a1 ENSMUSG00000037742 410.25 4262.03 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
20. Hmga2 ENSMUSG00000056758 378.34 3930.52 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
21. mt-Rnr1 ENSMUSG00000064337 373.78 3883.15 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
22. Npm1 ENSMUSG00000057113 287.18 2983.48 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Hbb-y ENSMUSG00000052187 282.62 2936.10 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
24. Nedd4 ENSMUSG00000032216 282.62 2936.10 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Tuba1b ENSMUSG00000023004 279.20 2900.57 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. Hba-a1 ENSMUSG00000069919 227.92 2367.83 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
27. Rpsa ENSMUSG00000032518 227.92 2367.83 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
28. Hsp90ab1 ENSMUSG00000023944 201.71 2095.54 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
29. Tubb5 ENSMUSG00000001525 198.29 2060.01 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
30. Pkm ENSMUSG00000032294 197.15 2048.17 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
31. Peg3 ENSMUSG00000002265 189.17 1965.26 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
32. Ubb ENSMUSG00000019505 180.05 1870.52 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
33. Tpt1 ENSMUSG00000060126 175.50 1823.25 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
34. Chchd2 ENSMUSG00000070493 169.80 1764.03 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
35. Cfl1 ENSMUSG00000056201 157.26 1633.75 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
36. Malat1 ENSMUSG00000092341 156.12 1621.91 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
37. Myl6 ENSMUSG00000090841 156.12 1621.91 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
38. Rpl23 ENSMUSG00000071415 156.12 1621.91 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
39. Hnrnpc ENSMUSG00000060373 154.98 1610.07 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
40. Set ENSMUSG00000054766 153.84 1598.22 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
41. Eif4g2 ENSMUSG00000005610 149.29 1550.95 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
42. Gm17132 ENSMUSG00000061331 148.15 1539.11 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
43. Ybx1 ENSMUSG00000028639 148.15 1539.11 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
44. Grb10 ENSMUSG00000020176 145.87 1515.42 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
45. Pbx1 ENSMUSG00000052534 145.87 1515.42 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
46. Atp5g3 ENSMUSG00000018770 141.31 1468.05 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
47. Cdkn1c ENSMUSG00000037664 141.31 1468.05 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
48. Eef1b2 ENSMUSG00000025967 141.31 1468.05 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
49. Hba-x ENSMUSG00000055609 139.03 1444.36 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
50. Acta2 ENSMUSG00000035783 133.33 1385.15 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
51. Rps20 ENSMUSG00000028234 132.19 1373.30 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
52. Gm5805 ENSMUSG00000061848 131.05 1361.46 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
53. Rpl4 ENSMUSG00000032399 131.05 1361.46 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
54. Banf1 ENSMUSG00000024844 127.63 1325.93 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
55. Ndufa12 ENSMUSG00000020022 121.94 1266.82 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
56. Hsp90aa1 ENSMUSG00000021270 119.66 1243.13 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
57. Rps26 ENSMUSG00000025362 118.52 1231.29 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
58. Eif5a ENSMUSG00000078812 116.24 1207.60 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
59. Ago2 ENSMUSG00000036698 113.96 1183.92 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
60. Hbb-bh1 ENSMUSG00000052217 112.82 1172.07 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
61. Rps4x ENSMUSG00000031320 111.68 1160.23 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
62. Pabpc1 ENSMUSG00000022283 110.54 1148.39 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
63. Son ENSMUSG00000022961 108.26 1124.70 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
64. Paics ENSMUSG00000029247 105.98 1101.01 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
65. Fkbp1a ENSMUSG00000032966 104.84 1089.17 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
66. Col3a1 ENSMUSG00000026043 102.56 1065.48 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
67. Gm14303 ENSMUSG00000081344 102.56 1065.48 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
68. Rpl18a ENSMUSG00000045128 102.56 1065.48 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
69. U2af2 ENSMUSG00000030435 102.56 1065.48 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
70. Ywhab ENSMUSG00000018326 102.56 1065.48 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
71. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 100.28 1041.80 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
72. Rps5 ENSMUSG00000012848 99.14 1029.95 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
73. Trim28 ENSMUSG00000005566 95.73 994.53 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
74. Lamp1 ENSMUSG00000031447 94.59 982.68 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
75. Sub1 ENSMUSG00000022205 94.59 982.68 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
76. Wbp5 94.59 982.68 WW domain binding protein 5
77. Pcbp1 ENSMUSG00000051695 93.45 970.84 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
78. Rrm2 ENSMUSG00000020649 93.45 970.84 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
79. Cdk4 ENSMUSG00000006728 92.31 959.00 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
80. Tmsb4x ENSMUSG00000049775 87.75 911.62 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
81. Sparc ENSMUSG00000018593 85.47 887.94 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
82. Cox8a ENSMUSG00000035885 84.33 876.09 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
83. Gpc3 ENSMUSG00000055653 83.19 864.25 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
84. Hba-a2 ENSMUSG00000069917 83.19 864.25 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
85. Tsc22d1 ENSMUSG00000022010 83.19 864.25 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
86. Arpc2 ENSMUSG00000006304 80.91 840.56 actin related protein 2/3 complex, subunit 2 [Source:MGI Symbol;Acc:MGI:1923959]
87. Ran ENSMUSG00000029430 80.91 840.56 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
88. Tpm1 ENSMUSG00000032366 79.77 828.72 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
89. Actc1 ENSMUSG00000068614 78.63 816.88 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
90. Rps3a1 ENSMUSG00000028081 77.49 805.03 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
91. Cltc ENSMUSG00000047126 76.35 793.19 clathrin, heavy polypeptide (Hc) [Source:MGI Symbol;Acc:MGI:2388633]
92. Eef2 ENSMUSG00000034994 76.35 793.19 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
93. Ddx5 ENSMUSG00000020719 75.21 781.35 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
94. Ngfrap1 75.21 781.35 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
95. Rplp1 ENSMUSG00000007892 75.21 781.35 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
96. Hmgn1 ENSMUSG00000040681 72.93 757.66 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
97. Rpl32 ENSMUSG00000057841 72.93 757.66 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
98. Sfpq ENSMUSG00000028820 72.93 757.66 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
99. Srsf3 ENSMUSG00000071172 72.93 757.66 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
100. Cdc42 ENSMUSG00000006699 71.79 745.82 cell division cycle 42 [Source:MGI Symbol;Acc:MGI:106211]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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