Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s41.

Sample reads: 96,244. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4645.74 48270.45 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Rnr2 ENSMUSG00000064339 4568.15 47464.27 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
3. mt-Nd4 ENSMUSG00000064363 3586.78 37267.58 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. Ptma ENSMUSG00000026238 3318.39 34478.94 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
5. mt-Nd1 ENSMUSG00000064341 2930.41 30447.72 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 2808.08 29176.68 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Atp6 ENSMUSG00000064357 2377.19 24699.62 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
8. mt-Nd2 ENSMUSG00000064345 1495.33 15536.87 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. mt-Co1 ENSMUSG00000064351 1267.10 13165.50 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
10. mt-Nd5 ENSMUSG00000064367 1137.47 11818.61 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
11. mt-Nd3 ENSMUSG00000064360 1062.61 11040.79 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. H19 ENSMUSG00000000031 1025.19 10651.99 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. mt-Co3 ENSMUSG00000064358 699.28 7265.70 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
14. mt-Rnr1 ENSMUSG00000064337 571.47 5937.72 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
15. Igf2 ENSMUSG00000048583 538.61 5596.30 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
16. Actb ENSMUSG00000029580 518.53 5387.66 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
17. Mdk ENSMUSG00000027239 497.53 5169.47 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. Gm13340 ENSMUSG00000083563 446.41 4638.32 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Eef1a1 ENSMUSG00000037742 405.33 4211.48 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
20. Hmga2 ENSMUSG00000056758 398.02 4135.53 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
21. Gm10800 ENSMUSG00000075014 335.95 3490.61 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
22. Rpsa ENSMUSG00000032518 290.30 3016.29 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
23. Npm1 ENSMUSG00000057113 272.96 2836.13 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Nedd4 ENSMUSG00000032216 262.00 2722.25 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Tuba1b ENSMUSG00000023004 214.53 2229.02 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. Cfl1 ENSMUSG00000056201 208.14 2162.63 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
27. Hbb-y ENSMUSG00000052187 204.49 2124.70 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
28. Eif4g2 ENSMUSG00000005610 185.32 1925.52 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
29. Pbx1 ENSMUSG00000052534 178.02 1849.67 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
30. Peg3 ENSMUSG00000002265 177.10 1840.12 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
31. Ubb ENSMUSG00000019505 177.10 1840.12 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
32. Set ENSMUSG00000054766 168.89 1754.81 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
33. Hnrnpc ENSMUSG00000060373 163.41 1697.87 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
34. Pkm ENSMUSG00000032294 162.50 1688.42 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
35. Banf1 ENSMUSG00000024844 159.76 1659.95 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
36. Hba-a1 ENSMUSG00000069919 153.37 1593.55 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
37. Hsp90ab1 ENSMUSG00000023944 151.54 1574.54 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
38. Rpl18a ENSMUSG00000045128 147.89 1536.62 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
39. Rps20 ENSMUSG00000028234 146.98 1527.16 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
40. Rps26 ENSMUSG00000025362 144.24 1498.69 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
41. Rpl23 ENSMUSG00000071415 141.50 1470.22 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
42. Rpl4 ENSMUSG00000032399 140.59 1460.77 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
43. Gm17132 ENSMUSG00000061331 136.02 1413.28 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
44. Tubb5 ENSMUSG00000001525 136.02 1413.28 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
45. Tpt1 ENSMUSG00000060126 135.11 1403.83 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
46. Grb10 ENSMUSG00000020176 131.46 1365.90 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
47. Fkbp1a ENSMUSG00000032966 130.54 1356.34 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
48. Rrm2 ENSMUSG00000020649 130.54 1356.34 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
49. Myl6 ENSMUSG00000090841 129.63 1346.89 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
50. Cdkn1c ENSMUSG00000037664 126.89 1318.42 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
51. Malat1 ENSMUSG00000092341 125.07 1299.51 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
52. Eif5a ENSMUSG00000078812 121.42 1261.59 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
53. Gm5805 ENSMUSG00000061848 118.68 1233.12 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
54. Acta2 ENSMUSG00000035783 115.03 1195.19 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
55. Ywhab ENSMUSG00000018326 115.03 1195.19 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
56. Chchd2 ENSMUSG00000070493 114.11 1185.63 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
57. Eef1b2 ENSMUSG00000025967 114.11 1185.63 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
58. Hsp90aa1 ENSMUSG00000021270 114.11 1185.63 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
59. Paics ENSMUSG00000029247 111.37 1157.16 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
60. Col3a1 ENSMUSG00000026043 108.63 1128.69 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
61. Cox8a ENSMUSG00000035885 104.98 1090.77 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
62. Atp5g3 ENSMUSG00000018770 101.33 1052.85 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
63. Cdk4 ENSMUSG00000006728 100.42 1043.39 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
64. Rps4x ENSMUSG00000031320 98.59 1024.38 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
65. Wbp5 98.59 1024.38 WW domain binding protein 5
66. Gpc3 ENSMUSG00000055653 97.68 1014.92 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
67. Gm14303 ENSMUSG00000081344 94.94 986.45 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
68. Ago2 ENSMUSG00000036698 94.03 977.00 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
69. Rps5 ENSMUSG00000012848 90.38 939.07 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
70. Scd2 ENSMUSG00000025203 89.46 929.51 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
71. Hba-x ENSMUSG00000055609 87.64 910.60 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
72. Ngfrap1 86.73 901.15 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
73. Pabpc1 ENSMUSG00000022283 85.81 891.59 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
74. Tecr ENSMUSG00000031708 85.81 891.59 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
75. Ybx1 ENSMUSG00000028639 84.90 882.13 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
76. Ndufa12 ENSMUSG00000020022 83.99 872.68 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
77. Hspe1 ENSMUSG00000073676 82.16 853.66 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
78. Sub1 ENSMUSG00000022205 82.16 853.66 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
79. Cdk1 ENSMUSG00000019942 80.34 834.75 cyclin-dependent kinase 1 [Source:MGI Symbol;Acc:MGI:88351]
80. Rps3a1 ENSMUSG00000028081 80.34 834.75 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
81. Rplp1 ENSMUSG00000007892 79.42 825.19 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
82. Kpnb1 ENSMUSG00000001440 78.51 815.74 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
83. Hba-a2 ENSMUSG00000069917 77.60 806.28 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
84. Trim28 ENSMUSG00000005566 77.60 806.28 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
85. Hbb-bh1 ENSMUSG00000052217 76.68 796.73 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
86. Hmgn1 ENSMUSG00000040681 76.68 796.73 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
87. Tmpo ENSMUSG00000019961 75.77 787.27 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
88. Ywhaq ENSMUSG00000076432 74.86 777.81 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta [Source:MGI Symbol;Acc:MGI:891963]
89. Fkbp4 ENSMUSG00000030357 73.94 768.26 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
90. Morf4l1 ENSMUSG00000062270 73.94 768.26 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
91. Son ENSMUSG00000022961 73.94 768.26 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
92. Ran ENSMUSG00000029430 73.03 758.80 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
93. Ddx39b ENSMUSG00000019432 72.12 749.35 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
94. Pcbp1 ENSMUSG00000051695 72.12 749.35 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
95. Tmsb4x ENSMUSG00000049775 71.21 739.89 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
96. Eef2 ENSMUSG00000034994 70.29 730.33 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
97. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 70.29 730.33 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
98. U2af2 ENSMUSG00000030435 70.29 730.33 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
99. Ddx3x ENSMUSG00000000787 69.38 720.88 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Source:MGI Symbol;Acc:MGI:103064]
100. Tpm1 ENSMUSG00000032366 69.38 720.88 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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