Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s40.

Sample reads: 96,235. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 6545.56 68019.16 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Cytb ENSMUSG00000064370 3689.09 38335.73 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd4 ENSMUSG00000064363 3151.09 32745.02 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. Ptma ENSMUSG00000026238 3084.72 32055.33 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
5. mt-Nd5 ENSMUSG00000064367 2570.02 26706.75 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
6. mt-Co2 ENSMUSG00000064354 2394.18 24879.48 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Nd1 ENSMUSG00000064341 2360.41 24528.55 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
8. mt-Atp6 ENSMUSG00000064357 2073.95 21551.76 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
9. mt-Nd2 ENSMUSG00000064345 1647.74 17122.74 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Co1 ENSMUSG00000064351 968.85 10067.95 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. H19 ENSMUSG00000000031 931.59 9680.76 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
12. mt-Rnr1 ENSMUSG00000064337 859.39 8930.48 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
13. mt-Nd3 ENSMUSG00000064360 823.29 8555.34 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. mt-Co3 ENSMUSG00000064358 624.16 6486.05 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Actb ENSMUSG00000029580 597.38 6207.76 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
16. Igf2 ENSMUSG00000048583 585.74 6086.80 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Mdk ENSMUSG00000027239 546.14 5675.30 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. Gm13340 ENSMUSG00000083563 391.27 4065.94 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Hmga2 ENSMUSG00000056758 380.79 3957.04 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
20. Eef1a1 ENSMUSG00000037742 345.85 3593.95 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
21. Npm1 ENSMUSG00000057113 319.07 3315.66 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Gm10800 ENSMUSG00000075014 306.26 3182.55 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
23. Tuba1b ENSMUSG00000023004 265.50 2758.98 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Nedd4 ENSMUSG00000032216 253.86 2638.02 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Pkm ENSMUSG00000032294 206.11 2141.82 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
26. Cdkn1c ENSMUSG00000037664 195.63 2032.92 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
27. Rpsa ENSMUSG00000032518 193.30 2008.71 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
28. Hbb-y ENSMUSG00000052187 190.98 1984.60 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
29. Pbx1 ENSMUSG00000052534 180.50 1875.69 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
30. Eif4g2 ENSMUSG00000005610 174.67 1815.11 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
31. Cfl1 ENSMUSG00000056201 172.34 1790.90 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
32. Tubb5 ENSMUSG00000001525 172.34 1790.90 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
33. Set ENSMUSG00000054766 166.52 1730.42 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
34. Ubb ENSMUSG00000019505 166.52 1730.42 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
35. Rpl4 ENSMUSG00000032399 164.19 1706.20 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
36. Rpl23 ENSMUSG00000071415 158.37 1645.73 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
37. Peg3 ENSMUSG00000002265 154.88 1609.46 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
38. Hsp90ab1 ENSMUSG00000023944 151.38 1573.09 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
39. Rps20 ENSMUSG00000028234 150.22 1561.03 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
40. Ybx1 ENSMUSG00000028639 144.40 1500.55 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
41. Gm17132 ENSMUSG00000061331 142.07 1476.34 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
42. Ywhab ENSMUSG00000018326 140.90 1464.18 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
43. Tpt1 ENSMUSG00000060126 139.74 1452.13 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
44. Banf1 ENSMUSG00000024844 135.08 1403.70 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
45. Chchd2 ENSMUSG00000070493 132.75 1379.49 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
46. Myl6 ENSMUSG00000090841 132.75 1379.49 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
47. Eef1b2 ENSMUSG00000025967 128.09 1331.07 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
48. Hsp90aa1 ENSMUSG00000021270 128.09 1331.07 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
49. Gm15459 ENSMUSG00000100801 123.44 1282.75 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
50. Hnrnpc ENSMUSG00000060373 123.44 1282.75 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
51. Rps26 ENSMUSG00000025362 123.44 1282.75 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
52. Grb10 ENSMUSG00000020176 121.11 1258.53 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
53. Hba-a1 ENSMUSG00000069919 121.11 1258.53 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
54. Rpl18a ENSMUSG00000045128 119.94 1246.37 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
55. Rps4x ENSMUSG00000031320 119.94 1246.37 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
56. Malat1 ENSMUSG00000092341 115.28 1197.95 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
57. Eif5a ENSMUSG00000078812 111.79 1161.68 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
58. Ndufa12 ENSMUSG00000020022 108.30 1125.42 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
59. Acta2 ENSMUSG00000035783 104.80 1089.04 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
60. Paics ENSMUSG00000029247 104.80 1089.04 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
61. Hspe1 ENSMUSG00000073676 103.64 1076.99 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
62. Atp5g3 ENSMUSG00000018770 98.98 1028.57 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
63. Col3a1 ENSMUSG00000026043 98.98 1028.57 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
64. Rps3a1 ENSMUSG00000028081 96.65 1004.35 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
65. Ran ENSMUSG00000029430 95.49 992.30 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
66. Rpl32 ENSMUSG00000057841 93.16 968.09 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
67. Tpm4 ENSMUSG00000031799 93.16 968.09 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
68. Wbp5 93.16 968.09 WW domain binding protein 5
69. Ago2 ENSMUSG00000036698 90.83 943.87 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
70. Cdk4 ENSMUSG00000006728 89.67 931.82 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
71. Rplp1 ENSMUSG00000007892 89.67 931.82 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
72. Pabpc1 ENSMUSG00000022283 88.50 919.66 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
73. Rps5 ENSMUSG00000012848 88.50 919.66 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
74. Son ENSMUSG00000022961 88.50 919.66 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
75. Gm5805 ENSMUSG00000061848 86.17 895.45 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
76. Rps9 ENSMUSG00000006333 86.17 895.45 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
77. U2af2 ENSMUSG00000030435 86.17 895.45 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
78. Cox8a ENSMUSG00000035885 85.01 883.39 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
79. Hba-x ENSMUSG00000055609 83.84 871.24 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
80. Trim28 ENSMUSG00000005566 82.68 859.18 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
81. Gpc3 ENSMUSG00000055653 81.51 847.02 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
82. Gm14303 ENSMUSG00000081344 79.18 822.81 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
83. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 79.18 822.81 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
84. Pcbp1 ENSMUSG00000051695 79.18 822.81 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
85. Fkbp1a ENSMUSG00000032966 78.02 810.76 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
86. Pbrm1 ENSMUSG00000042323 78.02 810.76 polybromo 1 [Source:MGI Symbol;Acc:MGI:1923998]
87. Srsf3 ENSMUSG00000071172 78.02 810.76 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
88. Eef2 ENSMUSG00000034994 76.86 798.70 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
89. Rpl37 ENSMUSG00000041841 76.86 798.70 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
90. Tmsb4x ENSMUSG00000049775 76.86 798.70 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
91. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 74.53 774.49 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
92. Gm14586 ENSMUSG00000083621 73.36 762.33 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
93. Marcks ENSMUSG00000069662 73.36 762.33 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
94. Hbb-bh1 ENSMUSG00000052217 72.20 750.28 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
95. Tuba1a ENSMUSG00000072235 72.20 750.28 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
96. Anp32b ENSMUSG00000028333 71.03 738.12 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
97. Gm21897 ENSMUSG00000094472 71.03 738.12 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
98. Lamp1 ENSMUSG00000031447 71.03 738.12 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
99. Sub1 ENSMUSG00000022205 69.87 726.06 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
100. Caprin1 ENSMUSG00000027184 67.54 701.85 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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