Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s38.

Sample reads: 96,239. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4098.50 42586.68 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 4006.04 41625.94 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Rnr2 ENSMUSG00000064339 3613.55 37547.66 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
4. mt-Nd4 ENSMUSG00000064363 2920.09 30342.06 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2257.76 23459.92 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Atp6 ENSMUSG00000064357 2201.15 22871.70 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Co2 ENSMUSG00000064354 2084.16 21656.08 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Nd5 ENSMUSG00000064367 1216.15 12636.77 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
9. mt-Nd2 ENSMUSG00000064345 1214.27 12617.23 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Co1 ENSMUSG00000064351 1069.91 11117.22 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. H19 ENSMUSG00000000031 923.67 9597.67 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
12. mt-Nd3 ENSMUSG00000064360 792.53 8235.02 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. Actb ENSMUSG00000029580 739.69 7685.97 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. mt-Co3 ENSMUSG00000064358 723.65 7519.30 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Igf2 ENSMUSG00000048583 663.27 6891.90 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
16. Mdk ENSMUSG00000027239 562.32 5842.95 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. Gm13340 ENSMUSG00000083563 441.55 4588.06 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Hmga2 ENSMUSG00000056758 370.79 3852.80 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
19. Eef1a1 ENSMUSG00000037742 367.96 3823.40 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
20. Npm1 ENSMUSG00000057113 285.88 2970.52 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Tuba1b ENSMUSG00000023004 264.18 2745.04 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
22. mt-Rnr1 ENSMUSG00000064337 258.52 2686.23 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
23. Tubb5 ENSMUSG00000001525 256.63 2666.59 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
24. Ubb ENSMUSG00000019505 222.66 2313.61 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
25. Pkm ENSMUSG00000032294 218.89 2274.44 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
26. Nedd4 ENSMUSG00000032216 211.34 2195.99 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Cfl1 ENSMUSG00000056201 199.08 2068.60 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
28. Rpsa ENSMUSG00000032518 195.30 2029.32 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
29. Rpl4 ENSMUSG00000032399 184.92 1921.47 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
30. Cdkn1c ENSMUSG00000037664 177.38 1843.12 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
31. Hbb-y ENSMUSG00000052187 174.54 1813.61 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
32. Pbx1 ENSMUSG00000052534 167.94 1745.03 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
33. Myl6 ENSMUSG00000090841 167.00 1735.26 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
34. Eif4g2 ENSMUSG00000005610 163.22 1695.99 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
35. Hsp90ab1 ENSMUSG00000023944 161.34 1676.45 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
36. Peg3 ENSMUSG00000002265 158.51 1647.05 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
37. Tpt1 ENSMUSG00000060126 146.24 1519.55 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
38. Rpl23 ENSMUSG00000071415 144.35 1499.91 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
39. Ybx1 ENSMUSG00000028639 144.35 1499.91 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
40. Chchd2 ENSMUSG00000070493 139.64 1450.97 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
41. Eef1b2 ENSMUSG00000025967 138.69 1441.10 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
42. Hnrnpc ENSMUSG00000060373 138.69 1441.10 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
43. Acta2 ENSMUSG00000035783 132.09 1372.52 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
44. Fkbp1a ENSMUSG00000032966 131.14 1362.65 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
45. U2af2 ENSMUSG00000030435 130.20 1352.88 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
46. Atp5g3 ENSMUSG00000018770 126.43 1313.71 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
47. Banf1 ENSMUSG00000024844 126.43 1313.71 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
48. Eif5a ENSMUSG00000078812 126.43 1313.71 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
49. Hsp90aa1 ENSMUSG00000021270 126.43 1313.71 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
50. Col3a1 ENSMUSG00000026043 125.48 1303.84 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
51. Paics ENSMUSG00000029247 123.60 1284.30 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
52. Grb10 ENSMUSG00000020176 122.65 1274.43 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
53. Pcbp1 ENSMUSG00000051695 122.65 1274.43 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
54. Rps26 ENSMUSG00000025362 122.65 1274.43 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
55. Ywhab ENSMUSG00000018326 119.82 1245.03 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
56. Set ENSMUSG00000054766 118.88 1235.26 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
57. Rps20 ENSMUSG00000028234 117.94 1225.49 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
58. Wbp5 115.11 1196.08 WW domain binding protein 5
59. Rps4x ENSMUSG00000031320 114.16 1186.21 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
60. Ago2 ENSMUSG00000036698 108.50 1127.40 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
61. Actc1 ENSMUSG00000068614 107.56 1117.63 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
62. Hba-a1 ENSMUSG00000069919 102.84 1068.59 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
63. Pabpc1 ENSMUSG00000022283 102.84 1068.59 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
64. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 99.07 1029.42 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
65. Ngfrap1 97.18 1009.78 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
66. Gm10800 ENSMUSG00000075014 96.24 1000.01 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
67. Ndufa12 ENSMUSG00000020022 95.29 990.14 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
68. Rps5 ENSMUSG00000012848 95.29 990.14 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
69. Trim28 ENSMUSG00000005566 95.29 990.14 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
70. Anp32b ENSMUSG00000028333 94.35 980.37 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
71. Tuba1a ENSMUSG00000072235 93.41 970.60 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
72. Rpl18a ENSMUSG00000045128 92.46 960.73 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
73. Ran ENSMUSG00000029430 91.52 950.97 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
74. Crabp1 ENSMUSG00000032291 89.63 931.33 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
75. Rps3a1 ENSMUSG00000028081 89.63 931.33 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
76. Rrm2 ENSMUSG00000020649 89.63 931.33 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
77. Gm5805 ENSMUSG00000061848 88.69 921.56 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
78. Igfbp4 ENSMUSG00000017493 88.69 921.56 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
79. Lamp1 ENSMUSG00000031447 88.69 921.56 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
80. Rpl41 ENSMUSG00000093674 88.69 921.56 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
81. Cdk4 ENSMUSG00000006728 87.74 911.69 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
82. Adprh ENSMUSG00000002844 85.86 892.15 ADP-ribosylarginine hydrolase [Source:MGI Symbol;Acc:MGI:1098234]
83. Cox8a ENSMUSG00000035885 84.91 882.28 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
84. Malat1 ENSMUSG00000092341 84.91 882.28 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
85. Fscn1 ENSMUSG00000029581 83.97 872.52 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
86. Gm17132 ENSMUSG00000061331 83.97 872.52 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
87. Son ENSMUSG00000022961 80.20 833.34 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
88. Gpc3 ENSMUSG00000055653 78.31 813.70 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
89. Hba-x ENSMUSG00000055609 78.31 813.70 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
90. Tpm4 ENSMUSG00000031799 78.31 813.70 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
91. Hnrnpa2b1 ENSMUSG00000004980 76.42 794.06 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
92. Marcksl1 ENSMUSG00000047945 74.54 774.53 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
93. Meg3 ENSMUSG00000021268 74.54 774.53 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
94. Col1a2 ENSMUSG00000029661 73.59 764.66 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
95. Ddx39b ENSMUSG00000019432 73.59 764.66 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
96. Eef2 ENSMUSG00000034994 73.59 764.66 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
97. Cd24a ENSMUSG00000047139 72.65 754.89 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
98. Col1a1 ENSMUSG00000001506 72.65 754.89 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
99. Sparc ENSMUSG00000018593 72.65 754.89 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
100. Rpl13 ENSMUSG00000000740 71.70 745.02 ribosomal protein L13 [Source:MGI Symbol;Acc:MGI:105922]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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