Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s37.

Sample reads: 96,251. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 5316.01 55230.42 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 4037.10 41943.25 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Nd4 ENSMUSG00000064363 3547.92 36860.94 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Nd1 ENSMUSG00000064341 3283.47 34113.45 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 3257.30 33841.55 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Atp6 ENSMUSG00000064357 2853.86 29650.03 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Rnr2 ENSMUSG00000064339 1625.49 16887.95 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. mt-Co1 ENSMUSG00000064351 1294.26 13446.65 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd2 ENSMUSG00000064345 1289.74 13399.69 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. H19 ENSMUSG00000000031 1113.75 11571.25 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. mt-Nd3 ENSMUSG00000064360 1080.35 11224.24 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. mt-Co3 ENSMUSG00000064358 794.24 8251.72 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. mt-Nd5 ENSMUSG00000064367 710.31 7379.73 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
14. Mdk ENSMUSG00000027239 667.89 6939.01 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. Actb ENSMUSG00000029580 666.08 6920.20 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
16. Gm13340 ENSMUSG00000083563 546.94 5682.41 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
17. Igf2 ENSMUSG00000048583 485.57 5044.81 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
18. Eef1a1 ENSMUSG00000037742 463.91 4819.77 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
19. Npm1 ENSMUSG00000057113 316.79 3291.27 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
20. Hmga2 ENSMUSG00000056758 277.08 2878.71 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
21. Rpsa ENSMUSG00000032518 256.32 2663.02 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
22. Ubb ENSMUSG00000019505 223.83 2325.47 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
23. Tuba1b ENSMUSG00000023004 221.12 2297.32 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Cfl1 ENSMUSG00000056201 218.42 2269.26 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Nedd4 ENSMUSG00000032216 208.49 2166.10 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
26. Rpl18a ENSMUSG00000045128 206.68 2147.29 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
27. Pkm ENSMUSG00000032294 194.05 2016.07 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
28. mt-Rnr1 ENSMUSG00000064337 193.15 2006.72 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
29. Myl6 ENSMUSG00000090841 180.51 1875.40 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
30. Tubb5 ENSMUSG00000001525 177.80 1847.24 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
31. Eif4g2 ENSMUSG00000005610 176.00 1828.54 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
32. Cdkn1c ENSMUSG00000037664 170.58 1772.23 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
33. Rpl4 ENSMUSG00000032399 168.78 1753.53 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
34. Hbb-y ENSMUSG00000052187 162.46 1687.87 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
35. Ndufa12 ENSMUSG00000020022 162.46 1687.87 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
36. Banf1 ENSMUSG00000024844 158.85 1650.36 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
37. Rps20 ENSMUSG00000028234 158.85 1650.36 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
38. Hnrnpc ENSMUSG00000060373 154.34 1603.51 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
39. Chchd2 ENSMUSG00000070493 149.82 1556.55 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
40. Hsp90ab1 ENSMUSG00000023944 149.82 1556.55 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
41. Tpt1 ENSMUSG00000060126 147.12 1528.50 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
42. Rpl23 ENSMUSG00000071415 146.21 1519.04 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
43. Acta2 ENSMUSG00000035783 144.41 1500.34 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
44. Grb10 ENSMUSG00000020176 144.41 1500.34 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
45. Hba-a1 ENSMUSG00000069919 137.19 1425.33 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
46. Rps26 ENSMUSG00000025362 135.38 1406.52 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
47. Eef1b2 ENSMUSG00000025967 133.58 1387.82 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
48. Atp5g3 ENSMUSG00000018770 130.87 1359.67 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
49. Rrm2 ENSMUSG00000020649 129.97 1350.32 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
50. Fkbp1a ENSMUSG00000032966 127.26 1322.16 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
51. Pbx1 ENSMUSG00000052534 124.55 1294.01 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
52. Paics ENSMUSG00000029247 122.75 1275.30 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
53. Col3a1 ENSMUSG00000026043 121.84 1265.85 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
54. Ywhab ENSMUSG00000018326 119.14 1237.80 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
55. Rps5 ENSMUSG00000012848 116.43 1209.64 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
56. Eif5a ENSMUSG00000078812 114.62 1190.84 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
57. Rps3a1 ENSMUSG00000028081 110.11 1143.98 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
58. U2af2 ENSMUSG00000030435 110.11 1143.98 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
59. Cdk4 ENSMUSG00000006728 109.21 1134.63 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
60. Tecr ENSMUSG00000031708 109.21 1134.63 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
61. Ybx1 ENSMUSG00000028639 108.31 1125.28 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
62. Hsp90aa1 ENSMUSG00000021270 106.50 1106.48 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
63. Rps4x ENSMUSG00000031320 103.79 1078.32 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
64. Trim28 ENSMUSG00000005566 102.89 1068.97 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
65. Cox8a ENSMUSG00000035885 101.99 1059.62 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
66. Hba-x ENSMUSG00000055609 100.18 1040.82 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
67. Rplp1 ENSMUSG00000007892 100.18 1040.82 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
68. Actc1 ENSMUSG00000068614 99.28 1031.46 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
69. Gm5805 ENSMUSG00000061848 99.28 1031.46 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
70. Peg3 ENSMUSG00000002265 98.38 1022.11 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
71. Tmsb4x ENSMUSG00000049775 98.38 1022.11 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
72. Set ENSMUSG00000054766 95.67 993.96 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
73. Tpm4 ENSMUSG00000031799 95.67 993.96 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
74. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 92.96 965.80 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
75. Ran ENSMUSG00000029430 92.06 956.45 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
76. Tuba1a ENSMUSG00000072235 91.16 947.10 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
77. Crabp1 ENSMUSG00000032291 89.35 928.30 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
78. Gm10800 ENSMUSG00000075014 86.64 900.14 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
79. Rpl37 ENSMUSG00000041841 86.64 900.14 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
80. Lamp1 ENSMUSG00000031447 85.74 890.79 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
81. Pabpc1 ENSMUSG00000022283 84.84 881.44 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
82. Ngfrap1 83.94 872.09 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
83. Hnrnpa2b1 ENSMUSG00000004980 81.23 843.93 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
84. Gpc3 ENSMUSG00000055653 80.33 834.58 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
85. Hmgn1 ENSMUSG00000040681 77.62 806.43 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
86. Marcks ENSMUSG00000069662 77.62 806.43 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
87. Ago2 ENSMUSG00000036698 76.72 797.08 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
88. Anp32b ENSMUSG00000028333 76.72 797.08 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
89. Morf4l2 ENSMUSG00000031422 76.72 797.08 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
90. Son ENSMUSG00000022961 76.72 797.08 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
91. Eef2 ENSMUSG00000034994 75.81 787.62 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
92. Gm14303 ENSMUSG00000081344 75.81 787.62 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
93. Cd24a ENSMUSG00000047139 74.91 778.27 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
94. Pdia6 ENSMUSG00000020571 74.91 778.27 protein disulfide isomerase associated 6 [Source:MGI Symbol;Acc:MGI:1919103]
95. Rpl26 ENSMUSG00000060938 74.91 778.27 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
96. Gm8292 ENSMUSG00000100215 74.01 768.92 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
97. Caprin1 ENSMUSG00000027184 73.11 759.57 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
98. Kpnb1 ENSMUSG00000001440 72.20 750.12 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
99. Rps9 ENSMUSG00000006333 72.20 750.12 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
100. Tpm1 ENSMUSG00000032366 72.20 750.12 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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