Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s36.

Sample reads: 96,258. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4016.72 41728.90 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3700.50 38443.75 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Rnr2 ENSMUSG00000064339 2955.78 30707.01 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
4. mt-Nd4 ENSMUSG00000064363 2586.72 26872.92 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Atp6 ENSMUSG00000064357 2386.09 24788.61 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. mt-Co2 ENSMUSG00000064354 2013.73 20920.24 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. H19 ENSMUSG00000000031 1958.41 20345.53 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
8. mt-Nd1 ENSMUSG00000064341 1922.91 19976.73 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
9. mt-Nd2 ENSMUSG00000064345 1175.71 12214.22 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Co1 ENSMUSG00000064351 970.95 10087.01 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. mt-Nd3 ENSMUSG00000064360 903.25 9383.68 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. Igf2 ENSMUSG00000048583 834.72 8671.74 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
13. Mdk ENSMUSG00000027239 751.33 7805.42 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. mt-Co3 ENSMUSG00000064358 689.41 7162.14 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. mt-Nd5 ENSMUSG00000064367 648.12 6733.19 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
16. mt-Rnr1 ENSMUSG00000064337 603.54 6270.06 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
17. Actb ENSMUSG00000029580 575.47 5978.44 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
18. Eef1a1 ENSMUSG00000037742 445.84 4631.74 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
19. Hbb-y ENSMUSG00000052187 374.01 3885.52 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
20. Gm13340 ENSMUSG00000083563 349.24 3628.18 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. Hmga2 ENSMUSG00000056758 285.67 2967.77 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
22. Tuba1b ENSMUSG00000023004 274.94 2856.30 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
23. Hba-x ENSMUSG00000055609 266.68 2770.49 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
24. Cfl1 ENSMUSG00000056201 263.38 2736.20 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Npm1 ENSMUSG00000057113 262.55 2727.58 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
26. Rpsa ENSMUSG00000032518 256.77 2667.53 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
27. Pkm ENSMUSG00000032294 250.17 2598.97 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
28. Hba-a1 ENSMUSG00000069919 248.52 2581.82 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
29. Tubb5 ENSMUSG00000001525 248.52 2581.82 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
30. Nedd4 ENSMUSG00000032216 213.01 2212.92 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
31. Cdkn1c ENSMUSG00000037664 190.72 1981.35 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
32. Ubb ENSMUSG00000019505 184.94 1921.30 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
33. Eif4g2 ENSMUSG00000005610 183.29 1904.16 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
34. Rpl4 ENSMUSG00000032399 170.08 1766.93 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
35. Rpl23 ENSMUSG00000071415 166.78 1732.64 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
36. Tpt1 ENSMUSG00000060126 166.78 1732.64 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
37. Grb10 ENSMUSG00000020176 152.74 1586.79 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
38. Chchd2 ENSMUSG00000070493 147.79 1535.36 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
39. Hsp90ab1 ENSMUSG00000023944 147.79 1535.36 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
40. Rpl18a ENSMUSG00000045128 145.31 1509.60 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
41. Eif5a ENSMUSG00000078812 143.66 1492.45 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
42. Ago2 ENSMUSG00000036698 140.36 1458.17 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
43. Myl6 ENSMUSG00000090841 135.40 1406.64 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
44. Peg3 ENSMUSG00000002265 134.58 1398.12 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
45. Ywhab ENSMUSG00000018326 133.75 1389.50 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
46. Hsp90aa1 ENSMUSG00000021270 132.93 1380.98 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
47. Paics ENSMUSG00000029247 132.93 1380.98 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
48. Hnrnpc ENSMUSG00000060373 128.80 1338.08 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
49. Set ENSMUSG00000054766 127.15 1320.94 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
50. Eef1b2 ENSMUSG00000025967 126.32 1312.31 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
51. Hba-a2 ENSMUSG00000069917 126.32 1312.31 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
52. Trim28 ENSMUSG00000005566 125.50 1303.79 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
53. Rps26 ENSMUSG00000025362 122.19 1269.41 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
54. Col3a1 ENSMUSG00000026043 120.54 1252.27 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
55. Ndufa12 ENSMUSG00000020022 120.54 1252.27 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
56. Rps20 ENSMUSG00000028234 118.89 1235.12 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
57. Banf1 ENSMUSG00000024844 117.24 1217.98 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
58. Ybx1 ENSMUSG00000028639 115.59 1200.84 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
59. Pbx1 ENSMUSG00000052534 113.94 1183.70 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
60. U2af2 ENSMUSG00000030435 112.29 1166.56 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
61. Rplp1 ENSMUSG00000007892 109.81 1140.79 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
62. Ccnd2 ENSMUSG00000000184 108.98 1132.17 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
63. Anp32b ENSMUSG00000028333 100.73 1046.46 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
64. Hbb-bh1 ENSMUSG00000052217 100.73 1046.46 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
65. Rpl37 ENSMUSG00000041841 99.90 1037.84 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
66. Fscn1 ENSMUSG00000029581 99.08 1029.32 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
67. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 99.08 1029.32 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
68. Rps4x ENSMUSG00000031320 98.25 1020.70 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
69. Pabpc1 ENSMUSG00000022283 97.43 1012.18 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
70. Fkbp1a ENSMUSG00000032966 95.77 994.94 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
71. Cdk4 ENSMUSG00000006728 94.95 986.42 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
72. Hnrnpa2b1 ENSMUSG00000004980 94.12 977.79 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
73. Cox8a ENSMUSG00000035885 93.30 969.28 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
74. Gm9844 ENSMUSG00000091955 93.30 969.28 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
75. Ran ENSMUSG00000029430 89.99 934.89 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
76. Pcbp1 ENSMUSG00000051695 89.17 926.37 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
77. Lamp1 ENSMUSG00000031447 88.34 917.75 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
78. Arl6ip1 ENSMUSG00000030654 86.69 900.61 ADP-ribosylation factor-like 6 interacting protein 1 [Source:MGI Symbol;Acc:MGI:1858943]
79. Eef2 ENSMUSG00000034994 85.04 883.46 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
80. Marcks ENSMUSG00000069662 85.04 883.46 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
81. Rrm2 ENSMUSG00000020649 85.04 883.46 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
82. Gm5805 ENSMUSG00000061848 84.21 874.84 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
83. Rps5 ENSMUSG00000012848 84.21 874.84 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
84. Ldha ENSMUSG00000063229 83.39 866.32 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
85. Morf4l1 ENSMUSG00000062270 83.39 866.32 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
86. Tpm4 ENSMUSG00000031799 83.39 866.32 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
87. Wbp5 81.74 849.18 WW domain binding protein 5
88. Ddx5 ENSMUSG00000020719 80.91 840.56 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
89. Ywhaz ENSMUSG00000022285 80.91 840.56 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
90. Rpl32 ENSMUSG00000057841 80.09 832.04 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
91. Tmsb4x ENSMUSG00000049775 80.09 832.04 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
92. Tpm1 ENSMUSG00000032366 80.09 832.04 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
93. Atp5g3 ENSMUSG00000018770 79.26 823.42 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
94. Caprin1 ENSMUSG00000027184 79.26 823.42 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
95. Gm14303 ENSMUSG00000081344 79.26 823.42 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
96. Hoxc8 ENSMUSG00000001657 79.26 823.42 homeobox C8 [Source:MGI Symbol;Acc:MGI:96198]
97. Ngfrap1 79.26 823.42 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
98. Ywhae ENSMUSG00000020849 79.26 823.42 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
99. Cdk1 ENSMUSG00000019942 78.44 814.90 cyclin-dependent kinase 1 [Source:MGI Symbol;Acc:MGI:88351]
100. Rps9 ENSMUSG00000006333 78.44 814.90 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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