Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s35.

Sample reads: 96,250. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4534.39 47110.73 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 4436.35 46092.13 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Nd4 ENSMUSG00000064363 2946.24 30610.41 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Nd1 ENSMUSG00000064341 2666.52 27704.21 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Rnr2 ENSMUSG00000064339 2637.76 27405.41 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
6. mt-Atp6 ENSMUSG00000064357 2403.79 24974.54 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Co2 ENSMUSG00000064354 2218.18 23046.12 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Nd2 ENSMUSG00000064345 1228.69 12765.66 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. H19 ENSMUSG00000000031 1169.87 12154.54 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. mt-Co1 ENSMUSG00000064351 1070.53 11122.43 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. mt-Nd3 ENSMUSG00000064360 939.82 9764.40 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. Igf2 ENSMUSG00000048583 703.23 7306.31 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
13. Actb ENSMUSG00000029580 695.39 7224.86 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. mt-Co3 ENSMUSG00000064358 682.31 7088.96 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Mdk ENSMUSG00000027239 653.56 6790.26 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. mt-Nd5 ENSMUSG00000064367 611.73 6355.66 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
17. Eef1a1 ENSMUSG00000037742 488.86 5079.08 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
18. Gm13340 ENSMUSG00000083563 410.43 4264.22 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Hmga2 ENSMUSG00000056758 329.39 3422.25 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
20. Hbb-y ENSMUSG00000052187 313.71 3259.34 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
21. Npm1 ENSMUSG00000057113 270.57 2811.13 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Tuba1b ENSMUSG00000023004 249.66 2593.88 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
23. Pkm ENSMUSG00000032294 239.20 2485.20 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
24. Gm10800 ENSMUSG00000075014 236.59 2458.09 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
25. Hba-a1 ENSMUSG00000069919 228.75 2376.63 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
26. Nedd4 ENSMUSG00000032216 227.44 2363.02 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Rpsa ENSMUSG00000032518 218.29 2267.96 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
28. Eif4g2 ENSMUSG00000005610 206.52 2145.67 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
29. Ubb ENSMUSG00000019505 206.52 2145.67 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
30. Myl6 ENSMUSG00000090841 198.68 2064.22 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
31. Rpl18a ENSMUSG00000045128 196.07 2037.10 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
32. mt-Rnr1 ENSMUSG00000064337 194.76 2023.49 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
33. Peg3 ENSMUSG00000002265 190.84 1982.76 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
34. Rpl4 ENSMUSG00000032399 181.69 1887.70 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
35. Tubb5 ENSMUSG00000001525 181.69 1887.70 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
36. Cfl1 ENSMUSG00000056201 180.38 1874.09 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
37. Hsp90ab1 ENSMUSG00000023944 176.46 1833.36 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
38. Set ENSMUSG00000054766 175.15 1819.75 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
39. Tpt1 ENSMUSG00000060126 166.00 1724.68 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
40. Grb10 ENSMUSG00000020176 164.70 1711.18 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
41. Hnrnpc ENSMUSG00000060373 160.78 1670.45 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
42. Ybx1 ENSMUSG00000028639 149.01 1548.16 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
43. U2af2 ENSMUSG00000030435 142.48 1480.32 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
44. Chchd2 ENSMUSG00000070493 141.17 1466.71 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
45. Paics ENSMUSG00000029247 137.25 1425.98 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
46. Rps4x ENSMUSG00000031320 135.94 1412.37 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
47. Rpl23 ENSMUSG00000071415 134.63 1398.76 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
48. Banf1 ENSMUSG00000024844 132.02 1371.64 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
49. Eif5a ENSMUSG00000078812 132.02 1371.64 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
50. Ago2 ENSMUSG00000036698 128.10 1330.91 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
51. Rps20 ENSMUSG00000028234 128.10 1330.91 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
52. Ccnd2 ENSMUSG00000000184 126.79 1317.30 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
53. Col3a1 ENSMUSG00000026043 126.79 1317.30 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
54. Eef1b2 ENSMUSG00000025967 125.48 1303.69 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
55. Gm5805 ENSMUSG00000061848 124.18 1290.19 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
56. Ywhab ENSMUSG00000018326 124.18 1290.19 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
57. Hba-x ENSMUSG00000055609 122.87 1276.58 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
58. Rpl37 ENSMUSG00000041841 120.25 1249.36 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
59. Atp5g3 ENSMUSG00000018770 116.33 1208.63 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
60. Hsp90aa1 ENSMUSG00000021270 111.10 1154.29 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
61. Rps5 ENSMUSG00000012848 111.10 1154.29 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
62. Rrm2 ENSMUSG00000020649 108.49 1127.17 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
63. Hmgn1 ENSMUSG00000040681 107.18 1113.56 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
64. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 105.88 1100.06 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
65. Pabpc1 ENSMUSG00000022283 104.57 1086.45 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
66. Rps26 ENSMUSG00000025362 104.57 1086.45 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
67. Eef2 ENSMUSG00000034994 103.26 1072.84 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
68. Meg3 ENSMUSG00000021268 103.26 1072.84 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
69. Ran ENSMUSG00000029430 101.96 1059.33 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
70. Malat1 ENSMUSG00000092341 99.34 1032.11 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
71. Marcks ENSMUSG00000069662 99.34 1032.11 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
72. Ndufa12 ENSMUSG00000020022 98.03 1018.50 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
73. Trim28 ENSMUSG00000005566 96.73 1004.99 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
74. Hbb-bh1 ENSMUSG00000052217 95.42 991.38 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
75. Rps9 ENSMUSG00000006333 95.42 991.38 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
76. Hoxc8 ENSMUSG00000001657 92.81 964.26 homeobox C8 [Source:MGI Symbol;Acc:MGI:96198]
77. Lamp1 ENSMUSG00000031447 91.50 950.65 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
78. Pbx1 ENSMUSG00000052534 91.50 950.65 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
79. Sub1 ENSMUSG00000022205 91.50 950.65 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
80. Cdk4 ENSMUSG00000006728 88.88 923.43 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
81. Arl6ip1 ENSMUSG00000030654 87.58 909.93 ADP-ribosylation factor-like 6 interacting protein 1 [Source:MGI Symbol;Acc:MGI:1858943]
82. 2810417H13Rik 86.27 896.32 RIKEN cDNA 2810417H13 gene
83. Cdkn1c ENSMUSG00000037664 86.27 896.32 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
84. Pcbp1 ENSMUSG00000051695 86.27 896.32 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
85. Fkbp1a ENSMUSG00000032966 82.35 855.59 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
86. Fubp1 ENSMUSG00000028034 82.35 855.59 far upstream element (FUSE) binding protein 1 [Source:MGI Symbol;Acc:MGI:1196294]
87. Sf3b1 ENSMUSG00000025982 82.35 855.59 splicing factor 3b, subunit 1 [Source:MGI Symbol;Acc:MGI:1932339]
88. Wbp5 82.35 855.59 WW domain binding protein 5
89. Gm17132 ENSMUSG00000061331 81.04 841.98 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
90. Hspe1 ENSMUSG00000073676 81.04 841.98 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
91. Top2a ENSMUSG00000020914 81.04 841.98 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
92. Adprh ENSMUSG00000002844 79.73 828.37 ADP-ribosylarginine hydrolase [Source:MGI Symbol;Acc:MGI:1098234]
93. Tecr ENSMUSG00000031708 79.73 828.37 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
94. Hba-a2 ENSMUSG00000069917 78.43 814.86 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
95. Tmsb4x ENSMUSG00000049775 78.43 814.86 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
96. Ngfrap1 75.81 787.64 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
97. Rps3a1 ENSMUSG00000028081 75.81 787.64 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
98. Igfbp4 ENSMUSG00000017493 74.51 774.13 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
99. Son ENSMUSG00000022961 74.51 774.13 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
100. Tpm4 ENSMUSG00000031799 74.51 774.13 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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