Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s34.

Sample reads: 96,253. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4117.38 42776.77 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Rnr2 ENSMUSG00000064339 3650.06 37921.63 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
3. Ptma ENSMUSG00000026238 3578.73 37180.56 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Nd4 ENSMUSG00000064363 2801.49 29105.57 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Co2 ENSMUSG00000064354 2644.08 27470.19 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Atp6 ENSMUSG00000064357 2481.74 25783.59 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Nd1 ENSMUSG00000064341 2380.90 24735.93 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
8. mt-Nd3 ENSMUSG00000064360 1217.51 12649.10 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. mt-Nd2 ENSMUSG00000064345 1128.96 11729.12 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. H19 ENSMUSG00000000031 1033.04 10732.58 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. mt-Co1 ENSMUSG00000064351 946.95 9838.16 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
12. mt-Co3 ENSMUSG00000064358 728.04 7563.84 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. Igf2 ENSMUSG00000048583 671.47 6976.12 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
14. Mdk ENSMUSG00000027239 664.09 6899.44 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. mt-Nd5 ENSMUSG00000064367 661.63 6873.88 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
16. Actb ENSMUSG00000029580 624.74 6490.62 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
17. Hbb-y ENSMUSG00000052187 501.76 5212.94 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
18. mt-Rnr1 ENSMUSG00000064337 494.38 5136.27 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
19. Eef1a1 ENSMUSG00000037742 437.81 4548.55 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
20. Gm13340 ENSMUSG00000083563 400.92 4165.29 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
21. Hba-a1 ENSMUSG00000069919 378.78 3935.27 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
22. Gm10800 ENSMUSG00000075014 356.64 3705.25 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
23. Hba-x ENSMUSG00000055609 339.43 3526.45 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
24. Hmga2 ENSMUSG00000056758 314.83 3270.87 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
25. Npm1 ENSMUSG00000057113 270.56 2810.93 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
26. Nedd4 ENSMUSG00000032216 243.50 2529.80 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Tubb5 ENSMUSG00000001525 231.20 2402.01 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
28. Pkm ENSMUSG00000032294 228.74 2376.45 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
29. Grb10 ENSMUSG00000020176 223.82 2325.34 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
30. Hbb-bh1 ENSMUSG00000052217 221.36 2299.78 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
31. Tuba1b ENSMUSG00000023004 221.36 2299.78 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
32. Rpsa ENSMUSG00000032518 213.99 2223.21 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
33. Peg3 ENSMUSG00000002265 189.39 1967.63 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
34. Banf1 ENSMUSG00000024844 177.09 1839.84 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
35. Eif4g2 ENSMUSG00000005610 174.63 1814.29 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
36. Rpl4 ENSMUSG00000032399 169.71 1763.17 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
37. Rps20 ENSMUSG00000028234 169.71 1763.17 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
38. Cfl1 ENSMUSG00000056201 167.25 1737.61 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
39. Rpl18a ENSMUSG00000045128 164.79 1712.06 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
40. Rpl23 ENSMUSG00000071415 164.79 1712.06 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
41. Chchd2 ENSMUSG00000070493 162.33 1686.50 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
42. Hnrnpc ENSMUSG00000060373 157.41 1635.38 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
43. Set ENSMUSG00000054766 157.41 1635.38 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
44. Myl6 ENSMUSG00000090841 150.04 1558.81 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
45. Ubb ENSMUSG00000019505 150.04 1558.81 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
46. Ybx1 ENSMUSG00000028639 147.58 1533.26 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
47. Tpt1 ENSMUSG00000060126 145.12 1507.70 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
48. U2af2 ENSMUSG00000030435 142.66 1482.14 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
49. Hsp90ab1 ENSMUSG00000023944 140.20 1456.58 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
50. Rpl41 ENSMUSG00000093674 137.74 1431.02 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
51. Ccnd2 ENSMUSG00000000184 135.28 1405.47 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
52. Paics ENSMUSG00000029247 132.82 1379.91 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
53. Pcbp1 ENSMUSG00000051695 130.36 1354.35 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
54. Eef1b2 ENSMUSG00000025967 127.90 1328.79 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
55. Hba-a2 ENSMUSG00000069917 127.90 1328.79 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
56. Rplp1 ENSMUSG00000007892 122.98 1277.68 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
57. Fkbp1a ENSMUSG00000032966 115.60 1201.01 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
58. Eef2 ENSMUSG00000034994 113.14 1175.45 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
59. Hspe1 ENSMUSG00000073676 113.14 1175.45 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
60. Ndufa12 ENSMUSG00000020022 113.14 1175.45 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
61. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 110.68 1149.89 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
62. Ywhab ENSMUSG00000018326 110.68 1149.89 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
63. Pabpc1 ENSMUSG00000022283 108.22 1124.33 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
64. Rps26 ENSMUSG00000025362 108.22 1124.33 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
65. Cox8a ENSMUSG00000035885 105.76 1098.77 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
66. Gm5805 ENSMUSG00000061848 105.76 1098.77 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
67. Pbx1 ENSMUSG00000052534 105.76 1098.77 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
68. Rps4x ENSMUSG00000031320 105.76 1098.77 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
69. Atp5g3 ENSMUSG00000018770 103.30 1073.22 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
70. Gm17132 ENSMUSG00000061331 103.30 1073.22 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
71. Hsp90aa1 ENSMUSG00000021270 103.30 1073.22 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
72. Anp32b ENSMUSG00000028333 100.84 1047.66 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
73. Cd24a ENSMUSG00000047139 100.84 1047.66 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
74. Rps5 ENSMUSG00000012848 100.84 1047.66 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
75. Marcks ENSMUSG00000069662 98.38 1022.10 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
76. Rrm2 ENSMUSG00000020649 98.38 1022.10 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
77. Actc1 ENSMUSG00000068614 95.92 996.54 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
78. Fscn1 ENSMUSG00000029581 95.92 996.54 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
79. Gm14303 ENSMUSG00000081344 95.92 996.54 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
80. Rpl37 ENSMUSG00000041841 95.92 996.54 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
81. Tmsb4x ENSMUSG00000049775 95.92 996.54 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
82. Ywhae ENSMUSG00000020849 95.92 996.54 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
83. Eif5a ENSMUSG00000078812 93.47 971.09 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
84. Rps3a1 ENSMUSG00000028081 93.47 971.09 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
85. Ago2 ENSMUSG00000036698 91.01 945.53 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
86. Hmgn1 ENSMUSG00000040681 91.01 945.53 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
87. Rpl32 ENSMUSG00000057841 91.01 945.53 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
88. Wbp5 91.01 945.53 WW domain binding protein 5
89. Ran ENSMUSG00000029430 88.55 919.97 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
90. Malat1 ENSMUSG00000092341 86.09 894.42 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
91. Trim28 ENSMUSG00000005566 86.09 894.42 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
92. Lamp1 ENSMUSG00000031447 83.63 868.86 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
93. Hoxc8 ENSMUSG00000001657 81.17 843.30 homeobox C8 [Source:MGI Symbol;Acc:MGI:96198]
94. Meg3 ENSMUSG00000021268 81.17 843.30 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
95. H3f3b ENSMUSG00000016559 78.71 817.74 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
96. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 78.71 817.74 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
97. Prdx1 ENSMUSG00000028691 78.71 817.74 peroxiredoxin 1 [Source:MGI Symbol;Acc:MGI:99523]
98. Rpl13a ENSMUSG00000074129 78.71 817.74 ribosomal protein L13A [Source:MGI Symbol;Acc:MGI:1351455]
99. Son ENSMUSG00000022961 78.71 817.74 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
100. Tecr ENSMUSG00000031708 78.71 817.74 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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