Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s33.

Sample reads: 96,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4212.87 43771.88 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 4186.02 43492.91 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Rnr2 ENSMUSG00000064339 2779.40 28878.07 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
4. mt-Nd4 ENSMUSG00000064363 2519.08 26173.34 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2334.65 24257.10 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 2038.15 21176.46 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Atp6 ENSMUSG00000064357 2004.29 20824.65 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
8. H19 ENSMUSG00000000031 1380.94 14348.02 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
9. mt-Nd2 ENSMUSG00000064345 1294.56 13450.53 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. mt-Co1 ENSMUSG00000064351 1096.12 11388.73 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. Igf2 ENSMUSG00000048583 819.46 8514.22 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
12. mt-Nd5 ENSMUSG00000064367 812.46 8441.49 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
13. mt-Nd3 ENSMUSG00000064360 801.95 8332.29 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Mdk ENSMUSG00000027239 749.42 7786.50 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. Actb ENSMUSG00000029580 656.04 6816.28 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
16. mt-Co3 ENSMUSG00000064358 557.98 5797.43 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
17. Eef1a1 ENSMUSG00000037742 503.12 5227.44 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
18. Hmga2 ENSMUSG00000056758 380.55 3953.93 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
19. Gm13340 ENSMUSG00000083563 378.21 3929.62 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Hbb-y ENSMUSG00000052187 314.01 3262.58 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
21. mt-Rnr1 ENSMUSG00000064337 294.17 3056.44 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
22. Tuba1b ENSMUSG00000023004 276.66 2874.51 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
23. Npm1 ENSMUSG00000057113 270.82 2813.83 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Nedd4 ENSMUSG00000032216 242.80 2522.70 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Set ENSMUSG00000054766 241.64 2510.65 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
26. Rpsa ENSMUSG00000032518 236.97 2462.13 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
27. Hba-a1 ENSMUSG00000069919 213.62 2219.52 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
28. Hsp90ab1 ENSMUSG00000023944 212.45 2207.36 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
29. Eif4g2 ENSMUSG00000005610 186.77 1940.55 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
30. Peg3 ENSMUSG00000002265 186.77 1940.55 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
31. Cfl1 ENSMUSG00000056201 184.44 1916.34 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
32. Tubb5 ENSMUSG00000001525 183.27 1904.18 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
33. Grb10 ENSMUSG00000020176 177.43 1843.50 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
34. Ubb ENSMUSG00000019505 175.10 1819.30 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
35. Ybx1 ENSMUSG00000028639 172.76 1794.98 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
36. Rrm2 ENSMUSG00000020649 170.43 1770.77 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
37. Pkm ENSMUSG00000032294 163.43 1698.04 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
38. Hnrnpc ENSMUSG00000060373 162.26 1685.89 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
39. Tpt1 ENSMUSG00000060126 162.26 1685.89 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
40. Rpl4 ENSMUSG00000032399 161.09 1673.73 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
41. Hba-x ENSMUSG00000055609 157.59 1637.37 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
42. Gm10800 ENSMUSG00000075014 152.92 1588.84 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
43. Banf1 ENSMUSG00000024844 144.75 1503.96 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
44. Malat1 ENSMUSG00000092341 140.08 1455.44 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
45. Eef1b2 ENSMUSG00000025967 138.91 1443.28 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
46. Rpl23 ENSMUSG00000071415 135.41 1406.92 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
47. Paics ENSMUSG00000029247 133.07 1382.60 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
48. Rpl18a ENSMUSG00000045128 128.41 1334.18 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
49. U2af2 ENSMUSG00000030435 126.07 1309.87 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
50. Chchd2 ENSMUSG00000070493 124.90 1297.72 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
51. Atp5g3 ENSMUSG00000018770 123.74 1285.66 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
52. Ago2 ENSMUSG00000036698 122.57 1273.51 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
53. Myl6 ENSMUSG00000090841 122.57 1273.51 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
54. Hbb-bh1 ENSMUSG00000052217 119.07 1237.14 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
55. Eif5a ENSMUSG00000078812 117.90 1224.99 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
56. Ndufa12 ENSMUSG00000020022 115.56 1200.67 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
57. Pabpc1 ENSMUSG00000022283 114.40 1188.62 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
58. Rps20 ENSMUSG00000028234 114.40 1188.62 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
59. Ccnd2 ENSMUSG00000000184 113.23 1176.46 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
60. Col3a1 ENSMUSG00000026043 112.06 1164.31 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
61. Cdk4 ENSMUSG00000006728 107.39 1115.79 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
62. Ran ENSMUSG00000029430 107.39 1115.79 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
63. Rps26 ENSMUSG00000025362 107.39 1115.79 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
64. Trim28 ENSMUSG00000005566 107.39 1115.79 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
65. Rplp1 ENSMUSG00000007892 106.23 1103.73 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
66. Ywhab ENSMUSG00000018326 106.23 1103.73 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
67. Cdkn1c ENSMUSG00000037664 102.72 1067.26 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
68. Hsp90aa1 ENSMUSG00000021270 102.72 1067.26 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
69. Pcbp1 ENSMUSG00000051695 101.56 1055.21 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
70. Gm5805 ENSMUSG00000061848 100.39 1043.06 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
71. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 100.39 1043.06 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
72. Hnrnpa2b1 ENSMUSG00000004980 99.22 1030.90 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
73. Hmgn1 ENSMUSG00000040681 96.89 1006.69 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
74. Anp32b ENSMUSG00000028333 95.72 994.53 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
75. Pbx1 ENSMUSG00000052534 95.72 994.53 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
76. 2810417H13Rik 93.39 970.33 RIKEN cDNA 2810417H13 gene
77. Hba-a2 ENSMUSG00000069917 93.39 970.33 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
78. Wbp5 92.22 958.17 WW domain binding protein 5
79. Ddx5 ENSMUSG00000020719 91.05 946.01 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
80. Fkbp1a ENSMUSG00000032966 91.05 946.01 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
81. Gpc3 ENSMUSG00000055653 88.72 921.80 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
82. Cox8a ENSMUSG00000035885 87.55 909.65 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
83. Top2a ENSMUSG00000020914 87.55 909.65 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
84. Col1a2 ENSMUSG00000029661 86.38 897.49 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
85. Lamp1 ENSMUSG00000031447 86.38 897.49 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
86. Tmsb4x ENSMUSG00000049775 86.38 897.49 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
87. Gm17132 ENSMUSG00000061331 85.21 885.34 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
88. Marcks ENSMUSG00000069662 85.21 885.34 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
89. Meg3 ENSMUSG00000021268 85.21 885.34 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
90. Rps4x ENSMUSG00000031320 84.05 873.28 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
91. Rps5 ENSMUSG00000012848 84.05 873.28 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
92. Hoxc8 ENSMUSG00000001657 82.88 861.13 homeobox C8 [Source:MGI Symbol;Acc:MGI:96198]
93. Sub1 ENSMUSG00000022205 82.88 861.13 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
94. Ddx39b ENSMUSG00000019432 81.71 848.97 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
95. Hspe1 ENSMUSG00000073676 81.71 848.97 heat shock protein 1 (chaperonin 10) [Source:MGI Symbol;Acc:MGI:104680]
96. Morf4l1 ENSMUSG00000062270 80.55 836.92 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
97. Ywhae ENSMUSG00000020849 80.55 836.92 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
98. Top1 ENSMUSG00000070544 79.38 824.76 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
99. Eef2 ENSMUSG00000034994 78.21 812.60 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
100. Kpnb1 ENSMUSG00000001440 78.21 812.60 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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