Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s32.

Sample reads: 96,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Rnr2 ENSMUSG00000064339 5049.05 52464.11 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
2. mt-Cytb ENSMUSG00000064370 3800.41 39489.63 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. Ptma ENSMUSG00000026238 3165.45 32891.83 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
4. mt-Nd4 ENSMUSG00000064363 2731.36 28381.25 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2147.46 22314.01 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 2044.47 21243.86 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Atp6 ENSMUSG00000064357 1881.05 19545.78 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
8. mt-Nd5 ENSMUSG00000064367 1572.08 16335.30 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
9. mt-Nd2 ENSMUSG00000064345 1373.76 14274.58 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. H19 ENSMUSG00000000031 1047.77 10887.26 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. mt-Co1 ENSMUSG00000064351 1044.37 10851.93 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
12. Igf2 ENSMUSG00000048583 837.54 8702.78 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
13. mt-Nd3 ENSMUSG00000064360 813.70 8455.06 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Actb ENSMUSG00000029580 693.69 7208.05 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. mt-Co3 ENSMUSG00000064358 670.71 6969.27 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. Mdk ENSMUSG00000027239 663.90 6898.51 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. Hmga2 ENSMUSG00000056758 588.15 6111.40 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
18. mt-Rnr1 ENSMUSG00000064337 530.27 5509.98 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
19. Gm13340 ENSMUSG00000083563 387.28 4024.18 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Eef1a1 ENSMUSG00000037742 339.61 3528.85 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
21. Gm10800 ENSMUSG00000075014 274.92 2856.66 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
22. Hbb-y ENSMUSG00000052187 255.35 2653.31 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
23. Tuba1b ENSMUSG00000023004 254.50 2644.48 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Tubb5 ENSMUSG00000001525 248.54 2582.55 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
25. Nedd4 ENSMUSG00000032216 240.88 2502.96 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
26. Cfl1 ENSMUSG00000056201 218.75 2273.01 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
27. Npm1 ENSMUSG00000057113 213.64 2219.91 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
28. Pbx1 ENSMUSG00000052534 201.72 2096.05 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
29. Peg3 ENSMUSG00000002265 201.72 2096.05 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
30. Rpsa ENSMUSG00000032518 196.62 2043.06 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
31. Set ENSMUSG00000054766 194.91 2025.29 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
32. Ubb ENSMUSG00000019505 191.51 1989.96 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
33. Hba-x ENSMUSG00000055609 184.70 1919.20 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
34. Gm17132 ENSMUSG00000061331 183.85 1910.36 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
35. Hsp90ab1 ENSMUSG00000023944 183.85 1910.36 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
36. Grb10 ENSMUSG00000020176 171.93 1786.51 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
37. Pkm ENSMUSG00000032294 169.38 1760.01 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
38. Malat1 ENSMUSG00000092341 167.68 1742.34 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
39. Cdkn1c ENSMUSG00000037664 161.72 1680.41 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
40. Hba-a1 ENSMUSG00000069919 161.72 1680.41 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
41. Tpt1 ENSMUSG00000060126 154.06 1600.82 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
42. Ybx1 ENSMUSG00000028639 150.65 1565.39 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
43. Eif4g2 ENSMUSG00000005610 149.80 1556.55 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
44. Col3a1 ENSMUSG00000026043 145.55 1512.39 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
45. Myl6 ENSMUSG00000090841 142.14 1476.96 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
46. U2af2 ENSMUSG00000030435 142.14 1476.96 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
47. Eif5a ENSMUSG00000078812 137.89 1432.80 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
48. Acta2 ENSMUSG00000035783 131.93 1370.87 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
49. Hnrnpc ENSMUSG00000060373 131.08 1362.04 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
50. Banf1 ENSMUSG00000024844 126.82 1317.77 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
51. Rpl4 ENSMUSG00000032399 125.12 1300.11 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
52. Rpl23 ENSMUSG00000071415 121.72 1264.78 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
53. Fkbp1a ENSMUSG00000032966 111.50 1158.58 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
54. Ago2 ENSMUSG00000036698 109.80 1140.92 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
55. Rps20 ENSMUSG00000028234 109.80 1140.92 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
56. Ywhab ENSMUSG00000018326 108.10 1123.25 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
57. Eef1b2 ENSMUSG00000025967 107.25 1114.42 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
58. Chchd2 ENSMUSG00000070493 106.39 1105.49 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
59. Hbb-bh1 ENSMUSG00000052217 106.39 1105.49 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
60. Fscn1 ENSMUSG00000029581 103.84 1078.99 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
61. Pabpc1 ENSMUSG00000022283 103.84 1078.99 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
62. Ndufa12 ENSMUSG00000020022 102.14 1061.33 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
63. Cdk4 ENSMUSG00000006728 100.44 1043.66 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
64. Rpl18a ENSMUSG00000045128 98.73 1025.89 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
65. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 98.73 1025.89 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
66. Rrm2 ENSMUSG00000020649 97.88 1017.06 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
67. Rps26 ENSMUSG00000025362 95.33 990.56 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
68. Wbp5 94.48 981.73 WW domain binding protein 5
69. Atp5g3 ENSMUSG00000018770 93.63 972.90 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
70. Paics ENSMUSG00000029247 93.63 972.90 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
71. Actc1 ENSMUSG00000068614 91.92 955.13 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
72. Col1a2 ENSMUSG00000029661 87.67 910.97 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
73. Hsp90aa1 ENSMUSG00000021270 87.67 910.97 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
74. Marcks ENSMUSG00000069662 87.67 910.97 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
75. Trim28 ENSMUSG00000005566 83.41 866.70 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
76. Hba-a2 ENSMUSG00000069917 82.56 857.87 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
77. Meg3 ENSMUSG00000021268 81.71 849.04 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
78. Lamp1 ENSMUSG00000031447 80.86 840.21 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
79. Top2a ENSMUSG00000020914 80.86 840.21 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
80. Col1a1 ENSMUSG00000001506 79.16 822.54 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
81. Pcbp1 ENSMUSG00000051695 79.16 822.54 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
82. Ran ENSMUSG00000029430 79.16 822.54 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
83. Gm14303 ENSMUSG00000081344 78.31 813.71 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
84. H3f3b ENSMUSG00000016559 78.31 813.71 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
85. Ngfrap1 77.46 804.88 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
86. Tecr ENSMUSG00000031708 77.46 804.88 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
87. Tmpo ENSMUSG00000019961 77.46 804.88 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
88. Anp32b ENSMUSG00000028333 75.75 787.11 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
89. Cox8a ENSMUSG00000035885 75.75 787.11 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
90. Gpc3 ENSMUSG00000055653 74.90 778.28 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
91. Gm21897 ENSMUSG00000094472 74.05 769.45 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
92. Hmgn1 ENSMUSG00000040681 74.05 769.45 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
93. Rps5 ENSMUSG00000012848 73.20 760.61 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
94. Caprin1 ENSMUSG00000027184 72.35 751.78 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
95. Rps4x ENSMUSG00000031320 72.35 751.78 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
96. Adprh ENSMUSG00000002844 71.50 742.95 ADP-ribosylarginine hydrolase [Source:MGI Symbol;Acc:MGI:1098234]
97. Ccnd2 ENSMUSG00000000184 71.50 742.95 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
98. Tmsb4x ENSMUSG00000049775 71.50 742.95 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
99. 2810417H13Rik 70.65 734.12 RIKEN cDNA 2810417H13 gene
100. Tpm1 ENSMUSG00000032366 70.65 734.12 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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