Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_1, section s31.

Sample reads: 96,257. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4329.97 44984.23 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 4164.62 43266.41 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Rnr2 ENSMUSG00000064339 3742.40 38879.95 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
4. mt-Nd4 ENSMUSG00000064363 2524.46 26226.72 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 2300.06 23895.42 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Atp6 ENSMUSG00000064357 2052.05 21318.83 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
7. mt-Co2 ENSMUSG00000064354 1941.33 20168.56 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Nd2 ENSMUSG00000064345 1243.04 12913.99 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
9. H19 ENSMUSG00000000031 1207.61 12545.91 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. mt-Co1 ENSMUSG00000064351 1017.17 10567.42 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
11. mt-Nd3 ENSMUSG00000064360 752.91 7822.01 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. Actb ENSMUSG00000029580 749.96 7791.36 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. Igf2 ENSMUSG00000048583 707.14 7346.51 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
14. mt-Nd5 ENSMUSG00000064367 689.43 7162.52 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
15. mt-Co3 ENSMUSG00000064358 643.66 6687.01 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. Mdk ENSMUSG00000027239 527.04 5475.44 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. Hmga2 ENSMUSG00000056758 484.22 5030.58 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
18. Gm13340 ENSMUSG00000083563 432.55 4493.78 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Eef1a1 ENSMUSG00000037742 397.12 4125.70 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
20. Hbb-y ENSMUSG00000052187 299.69 3113.49 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
21. Npm1 ENSMUSG00000057113 234.73 2438.62 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Nedd4 ENSMUSG00000032216 218.49 2269.90 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
23. mt-Rnr1 ENSMUSG00000064337 218.49 2269.90 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
24. Rpsa ENSMUSG00000032518 217.02 2254.63 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
25. Tubb5 ENSMUSG00000001525 200.78 2085.91 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Eif4g2 ENSMUSG00000005610 196.35 2039.89 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
27. Cfl1 ENSMUSG00000056201 190.44 1978.49 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
28. Peg3 ENSMUSG00000002265 190.44 1978.49 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
29. Hsp90ab1 ENSMUSG00000023944 180.11 1871.17 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
30. Myl6 ENSMUSG00000090841 177.16 1840.52 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
31. Hba-a1 ENSMUSG00000069919 174.20 1809.77 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
32. Pkm ENSMUSG00000032294 171.25 1779.12 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
33. Tuba1b ENSMUSG00000023004 171.25 1779.12 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
34. Ubb ENSMUSG00000019505 169.77 1763.75 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
35. Hnrnpc ENSMUSG00000060373 165.34 1717.72 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
36. Pbx1 ENSMUSG00000052534 162.39 1687.08 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
37. Set ENSMUSG00000054766 162.39 1687.08 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
38. Cdkn1c ENSMUSG00000037664 160.92 1671.80 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
39. Tpt1 ENSMUSG00000060126 157.96 1641.05 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
40. U2af2 ENSMUSG00000030435 157.96 1641.05 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
41. Eef2 ENSMUSG00000034994 146.15 1518.36 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
42. Gm10800 ENSMUSG00000075014 141.72 1472.33 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
43. Malat1 ENSMUSG00000092341 141.72 1472.33 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
44. Rpl18a ENSMUSG00000045128 140.25 1457.06 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
45. Acta2 ENSMUSG00000035783 138.77 1441.69 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
46. Ybx1 ENSMUSG00000028639 138.77 1441.69 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
47. Grb10 ENSMUSG00000020176 135.82 1411.04 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
48. Hba-x ENSMUSG00000055609 135.82 1411.04 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
49. Banf1 ENSMUSG00000024844 134.34 1395.66 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
50. Col3a1 ENSMUSG00000026043 132.87 1380.39 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
51. Wbp5 129.91 1349.64 WW domain binding protein 5
52. Rpl23 ENSMUSG00000071415 126.96 1318.99 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
53. Ywhab ENSMUSG00000018326 126.96 1318.99 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
54. Ago2 ENSMUSG00000036698 125.48 1303.62 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
55. Fkbp1a ENSMUSG00000032966 121.06 1257.70 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
56. Atp5g3 ENSMUSG00000018770 118.10 1226.95 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
57. Eef1b2 ENSMUSG00000025967 118.10 1226.95 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
58. Lamp1 ENSMUSG00000031447 115.15 1196.30 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
59. Crabp1 ENSMUSG00000032291 112.20 1165.65 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
60. Rps20 ENSMUSG00000028234 112.20 1165.65 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
61. Chchd2 ENSMUSG00000070493 110.72 1150.27 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
62. Hbb-bh1 ENSMUSG00000052217 110.72 1150.27 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
63. Pabpc1 ENSMUSG00000022283 106.29 1104.25 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
64. Rpl4 ENSMUSG00000032399 104.82 1088.98 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
65. Gm17132 ENSMUSG00000061331 100.39 1042.96 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
66. Hsp90aa1 ENSMUSG00000021270 100.39 1042.96 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
67. Ngfrap1 98.91 1027.58 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
68. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 98.91 1027.58 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
69. Tmsb4x ENSMUSG00000049775 97.44 1012.31 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
70. Trim28 ENSMUSG00000005566 95.96 996.93 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
71. Tuba1a ENSMUSG00000072235 95.96 996.93 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
72. Ndufc2 ENSMUSG00000030647 94.48 981.56 NADH:ubiquinone oxidoreductase subunit C2 [Source:MGI Symbol;Acc:MGI:1344370]
73. Actc1 ENSMUSG00000068614 93.01 966.28 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
74. Adprh ENSMUSG00000002844 93.01 966.28 ADP-ribosylarginine hydrolase [Source:MGI Symbol;Acc:MGI:1098234]
75. Gpc3 ENSMUSG00000055653 93.01 966.28 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
76. Rps5 ENSMUSG00000012848 93.01 966.28 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
77. Ran ENSMUSG00000029430 91.53 950.91 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
78. Rps4x ENSMUSG00000031320 91.53 950.91 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
79. Cdk4 ENSMUSG00000006728 90.05 935.53 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
80. Eif5a ENSMUSG00000078812 90.05 935.53 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
81. Meg3 ENSMUSG00000021268 90.05 935.53 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
82. Tpm4 ENSMUSG00000031799 90.05 935.53 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
83. Gm5805 ENSMUSG00000061848 88.58 920.26 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
84. Cox8a ENSMUSG00000035885 87.10 904.89 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
85. Rrm2 ENSMUSG00000020649 84.15 874.24 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
86. 2810417H13Rik 82.67 858.86 RIKEN cDNA 2810417H13 gene
87. Ndufa12 ENSMUSG00000020022 82.67 858.86 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
88. Gm14303 ENSMUSG00000081344 81.20 843.59 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
89. Rps26 ENSMUSG00000025362 81.20 843.59 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
90. Rps3a1 ENSMUSG00000028081 81.20 843.59 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
91. Rpl41 ENSMUSG00000093674 79.72 828.21 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
92. Son ENSMUSG00000022961 79.72 828.21 Son DNA binding protein [Source:MGI Symbol;Acc:MGI:98353]
93. Tecr ENSMUSG00000031708 79.72 828.21 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
94. Paics ENSMUSG00000029247 78.24 812.84 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
95. H3f3b ENSMUSG00000016559 76.77 797.57 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
96. Hoxc8 ENSMUSG00000001657 75.29 782.19 homeobox C8 [Source:MGI Symbol;Acc:MGI:96198]
97. Morf4l1 ENSMUSG00000062270 75.29 782.19 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
98. Plagl1 ENSMUSG00000019817 75.29 782.19 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
99. Rpl26 ENSMUSG00000060938 75.29 782.19 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
100. Cdc42 ENSMUSG00000006699 73.81 766.82 cell division cycle 42 [Source:MGI Symbol;Acc:MGI:106211]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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